Protein

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Genbank accession
AXY83381.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,61
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MGATGPKGDPGEQGPAGATGSKGDTGATGPAGPTGATGPAGPTGATGPKGDTGATGPTGPTGATGPAGTDATVTATSVGSVYASLPAKTTPVDADKIAIADSAASGALKGSLLSGFKTWIKGWITSADVGLGNVNNTSDANKPISTATQAALDAKAAVAAVREKLTAARTYYVRTDGNDSNTGLANTVGGAFLTIQKAIDTAAALDIGIHSVAINVGAGTFGPFSTKDPVGNGSVAVTGAGMGSTTISTSSGSCITAPLGSRKYSVAGFRLTTSDSSFAGNGLNIDINSQLSAGELDFGPCGNFHVNSSGMVILRGYTISGPARVHWYASNGATVICAGWTIVISGSVSFSTAFAYADCMSLLRVNENTYSGTATGVRYQIFANSVLFVNGAGESYLPGNSAGSKFTGAQYA
Physico‐chemical
properties
protein length:412 AA
molecular weight: 40416,23430 Da
isoelectric point:6,81451
aromaticity:0,06796
hydropathy:0,02840

Domains

Domains [InterPro]
IPR008160
STR
2–53
IPR008160 IPR011050
DC_0919
STR
2–412
DC_0919
PTHR24637
Unmapped
3–69
PTHR24637 IPR012334
G3DSA:1.20.5.320
STR
41–90
G3DSA:1.20.5.320
AXY83381.1
1 412
Architecture
STR
STR 2-412
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AXY83381.1
1 412
Domain Start End Length (AA) Confidence
N-terminal 1 187 187 0,9658
Central domain 188 386 200 0,9816
C-terminal 387 412 25 0,9513
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-187
Central
188-386
C-terminal
387-412

Taxonomy

  Name Taxonomy ID Lineage
Phage Acidovorax phage ACPWH
[NCBI] 		2301642 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Acidovorax citrulli
[NCBI] 		80869 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXY83381.1 [NCBI]
Genbank nucleotide accession
MH727593.1 [NCBI]
CDS location
range 41236 -> 42474
strand -
CDS
GTGGGGGCGACCGGACCAAAGGGCGATCCAGGTGAACAAGGACCTGCCGGCGCGACCGGGTCGAAAGGGGATACAGGGGCAACTGGTCCCGCAGGACCGACGGGCGCAACTGGTCCCGCAGGGCCGACAGGAGCAACTGGTCCCAAGGGGGATACAGGAGCAACTGGTCCCACGGGACCGACGGGCGCAACTGGTCCTGCGGGCACAGATGCGACGGTAACTGCAACCAGCGTGGGGTCGGTCTACGCTTCGCTGCCCGCCAAAACGACACCCGTTGACGCCGACAAGATCGCGATCGCGGACTCGGCCGCCAGCGGTGCACTCAAGGGCAGTTTGTTATCAGGCTTCAAGACTTGGATCAAGGGCTGGATCACGAGCGCCGATGTTGGCCTGGGCAACGTCAATAACACATCCGACGCCAACAAGCCGATCAGCACGGCGACCCAAGCCGCTTTGGATGCGAAGGCTGCGGTGGCGGCCGTGCGTGAAAAGCTGACTGCAGCCCGGACGTACTACGTGCGCACGGACGGGAACGACAGCAATACGGGGCTGGCTAACACTGTCGGTGGGGCGTTCCTGACCATTCAGAAGGCTATCGACACGGCTGCCGCGCTGGACATCGGAATCCATAGCGTTGCTATTAATGTGGGTGCCGGCACTTTTGGTCCGTTTTCTACAAAAGACCCAGTAGGTAATGGGTCTGTGGCGGTAACAGGTGCTGGCATGGGGTCAACCACAATATCGACCTCAAGCGGGTCCTGCATTACTGCACCGCTTGGTTCGCGAAAATACTCGGTCGCAGGCTTTCGATTGACCACGAGCGATTCTTCGTTTGCTGGAAATGGGTTGAACATTGACATAAATAGCCAATTGTCTGCTGGCGAACTGGACTTCGGTCCTTGCGGTAACTTCCATGTCAATTCATCCGGGATGGTAATCCTGCGTGGATATACGATAAGCGGGCCTGCTCGCGTGCACTGGTACGCTTCAAACGGAGCTACCGTGATTTGTGCCGGATGGACGATTGTTATATCCGGCTCAGTCTCTTTTTCAACGGCGTTTGCCTACGCAGATTGCATGTCCCTGCTTCGCGTGAACGAGAATACTTATTCAGGGACAGCGACGGGGGTGCGGTACCAAATTTTCGCTAACTCGGTGCTGTTTGTTAACGGCGCAGGGGAGTCATATTTGCCAGGAAATTCCGCGGGTTCTAAATTCACAGGAGCACAGTACGCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
94b519755e9399468a977cce056eb9a74a0ea114c5a50af1b638f4a0ad9d6709
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8686
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of a wide host range bacteriophage infecting Acidovorax citrulli and application of phage as a biocontrol of bacterial fruit blotch Rahimi-Midani,A., Kim,J.-O. and Choi,T.-J. 2020-06-03 — GenBank