Protein

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Genbank accession
AGH26588.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,58
Protein sequence
MSQLNVDKVVSLSGGGGTAEFQLVSNGNFNFDSGTFYIDSANNRVGIGTTSPRVSLDIANTDGMIVPVGTTVQRPGSAVEGMFRYNSTDRTFEGYAHNSTTNVTEWGPIAGAGGIPTQSTSRYSDDYSVNASLKSDGTNAFWSLDGTDTDWSMARIWTHGYVGGGYRSGSPWSNVNRTVHATDTSTNLGDTLDRSGAYMSGSWNDRRHFYHSMENTYRGSSTYTSGFSMTNEAGIAHQSAWDMTVNRASMGSFQDHVFAGGYSYLHGGGNARTDVFNLTTEVMRTSGFPPDQNDGGDDPTWGGHGRLMGWWKRSGSRAGFRWANESWTSWNHGPGGDGWKKILPTMIGHMYVGTGNNAQNGNQKVDDTTGIQVRGLDFGNMGEENFEMGMRKGYCLGNYNGAQNNNTFKVNYGTDSYNNLGGSSPPTGHDGMSSAHCCSSSSISGTTTGGSVVYDYGTTIPNY
Physico‐chemical
properties
protein length:463 AA
molecular weight: 49796,28470 Da
isoelectric point:5,56848
aromaticity:0,11231
hydropathy:-0,65724

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH26588.1
1 463
Domain Start End Length (AA) Confidence
N-terminal 1 107 107 0,0630
Central domain 108 308 202 0,3813
C-terminal 309 463 154 0,6965
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-107
Central
108-308
C-terminal
309-463

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage P-RSM3
[NCBI] 		536446 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus ssm4
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH26588.1 [NCBI]
Genbank nucleotide accession
HQ634176 [NCBI]
CDS location
range 53342 -> 54733
strand -
CDS
ATGTCTCAATTAAATGTTGATAAAGTTGTTTCTCTGAGTGGCGGTGGTGGTACTGCTGAGTTTCAGTTGGTTTCTAATGGAAATTTTAATTTTGACTCAGGAACTTTTTACATAGATTCTGCTAATAATCGAGTTGGTATTGGAACTACCTCACCGAGGGTAAGTCTCGATATTGCAAATACAGATGGTATGATAGTTCCTGTAGGAACTACAGTACAGAGACCAGGATCGGCAGTAGAAGGTATGTTCCGCTACAATAGTACCGATCGAACCTTTGAAGGATACGCACATAACTCTACTACAAATGTCACAGAGTGGGGACCTATTGCAGGTGCAGGTGGAATACCGACACAGAGTACAAGTAGATATAGTGATGACTATTCAGTTAATGCTTCACTTAAATCTGATGGTACAAACGCATTTTGGTCTTTAGATGGTACAGATACCGATTGGTCAATGGCAAGAATTTGGACACATGGATATGTAGGAGGAGGATATAGATCAGGGTCACCTTGGAGTAATGTTAATAGAACAGTTCATGCTACTGATACATCAACAAACTTAGGAGATACACTAGACAGATCAGGTGCATATATGTCTGGATCATGGAATGATAGGAGACACTTCTATCACTCAATGGAGAACACATACAGAGGATCATCAACATATACCTCTGGTTTTAGTATGACAAATGAAGCAGGTATAGCTCATCAATCTGCATGGGATATGACAGTAAATAGAGCATCTATGGGTTCATTCCAAGATCATGTATTTGCAGGAGGATATTCTTACTTACATGGTGGTGGTAATGCAAGAACTGACGTATTTAATCTTACAACAGAGGTCATGAGAACTTCTGGATTCCCACCTGATCAGAATGATGGTGGTGATGACCCAACATGGGGAGGACATGGTAGACTCATGGGATGGTGGAAGAGATCAGGTTCAAGAGCAGGATTTAGATGGGCAAACGAATCATGGACATCATGGAACCACGGACCAGGTGGTGATGGATGGAAGAAAATACTTCCTACTATGATCGGTCACATGTACGTTGGAACTGGTAATAACGCACAAAATGGTAATCAAAAGGTTGATGATACTACAGGCATACAGGTTAGAGGTCTTGACTTTGGTAATATGGGTGAAGAAAACTTTGAAATGGGTATGAGAAAGGGATACTGTTTAGGAAACTACAATGGTGCTCAGAACAATAATACCTTCAAGGTGAACTATGGAACCGATTCATATAATAATCTTGGTGGATCATCACCCCCAACTGGTCACGATGGTATGAGTTCTGCTCACTGTTGTTCATCCAGTTCAATATCTGGTACAACTACTGGTGGTTCAGTAGTGTATGACTACGGTACAACTATTCCTAATTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0f703fc7e1c5a370310cba5583e2e7a68c01a43a09a6ba3ee99685903f6f69a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3653
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage P-RSM3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank