Protein

View in Explore
Genbank accession
WOL25666.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MATKTIVTYTLDGTRTDFDVPFDYLARKFVVVTLIGADRRVLVQTTDYRFATKSQISTTIAHGSGDGYTTIEIRRFTSASERLVDFADGSILRAFDLNVAQLQTIHIAEEARDLTADTIGVNADGNLDARGRRIVNLADGIADGDATNLAQTLRLLGSSGGGGSATPGADLRLPVSQAKTFPLYLEGQRVFITDLGFYYRFTSSRVIITGYPDSTVVVDDEVHKLVAAGGMLVFDEFSRLPELESRNYGKYLAKVRSNQAIQMVSYGDSITYGYRPDGGQYPKPYPKIVAETMTIRTQSTWTELNKGNPSDRSITNYIRTMGDGTTGDISTIMLGVNDVLFGTNNGANPEEISTSVHSVENYVRIMRLFVARELLRGRCVVLLGTTQFVSLNNGPLGGFTAPYLARAYDAAAKQLAGETTCMFVDTKRDVTQQYGISESCHDGLHLREDFLVIFGRRLANVFLHVDYKNPFVLRPGGVFIPNYLHNPIVSNRPLVISAFTGGSSPPIGGGLADLHAAGVMIPNVMTSENSLTLSFYLDADNAVIYPTINATGTDYSFNMILDNGARQPYYASDIDILPVLRDPTYIVSGKAISGSDKKNRQTENYSQLNAACYFHITTRGWHSISFVTGANSGIASVEGLLCEDWISVKNNDVYGGLTGTLEVKSDGSHTATGRVLGVTNPSTGVYDVQIAALSPNVYEVTSEASQDSAPLTMRVLYKTNSQFRVEFWGAGDVKVAPTEFTLRVHGGR
Physico‐chemical
properties
protein length:748 AA
molecular weight: 81436,66640 Da
isoelectric point:5,70097
aromaticity:0,09225
hydropathy:-0,12193

Domains

Domains [InterPro]
DC_1510
STR
1–195
DC_1510 IPR036514
IPR005604
ATT
3–129
IPR005604 SSF52266 DC_0735
SSF52266
STR
261–462
SSF52266
IPR013830
ENZ
266–447
IPR013830
WOL25666.1
1 748
Architecture
ATT
STR
STR
RBD
ATT 1-129 | STR 130-195 | STR 249-462 | RBD 463-725 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WOL25666.1
1 748
Domain Start End Length (AA) Confidence
N-terminal 1 356 356 0,7285
Central domain 357 600 245 0,6658
C-terminal 601 748 147 0,8916
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-356
Central
357-600
C-terminal
601-748

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage PcaP1EGY
[NCBI] 		3077179 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pectobacterium sp.
[NCBI] 		1913084 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WOL25666.1 [NCBI]
Genbank nucleotide accession
OR599645.1 [NCBI]
CDS location
range 26823 -> 29069
strand +
CDS
ATGGCAACAAAGACTATTGTCACATACACACTTGATGGAACCCGTACAGACTTCGATGTGCCGTTTGACTATCTGGCCCGTAAGTTTGTCGTAGTGACGCTTATTGGTGCAGACCGTCGAGTACTGGTACAGACAACCGACTACCGATTCGCTACCAAGTCGCAGATATCCACAACGATAGCTCACGGCTCTGGTGATGGTTACACGACCATTGAGATTCGCCGCTTTACGTCAGCATCTGAGCGTCTGGTTGATTTTGCGGATGGTTCAATCCTGCGAGCGTTCGACCTGAACGTAGCCCAGTTGCAGACCATTCACATCGCTGAAGAAGCCCGTGACTTAACGGCTGATACGATTGGCGTCAACGCCGATGGTAACCTTGATGCCCGTGGTCGCCGTATCGTTAATCTGGCAGATGGTATCGCAGATGGTGATGCTACCAATTTAGCGCAGACCTTGCGACTCCTTGGGTCATCTGGTGGTGGCGGTTCAGCAACTCCCGGCGCAGACCTACGGTTACCTGTCAGTCAGGCTAAGACCTTCCCGCTGTACCTTGAGGGTCAACGTGTGTTCATTACAGACCTTGGGTTCTACTACCGATTCACTTCAAGCCGGGTTATCATCACTGGTTACCCAGACTCTACCGTTGTGGTTGATGATGAGGTACATAAGCTGGTAGCTGCTGGTGGCATGTTGGTGTTCGATGAGTTCTCAAGACTCCCAGAGCTGGAGTCACGGAACTACGGTAAGTACCTCGCTAAGGTTCGCTCCAATCAGGCTATCCAAATGGTATCCTATGGCGACTCAATCACTTACGGTTATCGTCCAGATGGCGGTCAGTACCCTAAGCCATACCCTAAGATTGTCGCAGAGACCATGACCATTCGTACCCAGTCAACGTGGACCGAGCTGAATAAGGGAAACCCTTCAGACCGCTCTATCACGAACTACATTCGCACTATGGGTGATGGCACTACTGGTGATATCTCAACGATTATGTTGGGTGTGAACGATGTTCTGTTTGGGACCAACAACGGGGCCAACCCTGAGGAAATCTCAACGTCCGTTCATAGCGTAGAGAACTACGTACGCATCATGCGACTGTTCGTAGCCCGTGAGTTGCTTCGTGGTCGTTGTGTTGTGCTGTTAGGCACCACTCAGTTTGTCTCATTGAACAATGGTCCTTTAGGTGGCTTTACGGCTCCTTATCTGGCCCGTGCTTATGATGCAGCAGCCAAACAGTTAGCAGGTGAAACGACCTGTATGTTTGTGGACACCAAGCGTGACGTTACGCAGCAGTACGGCATCAGTGAGTCCTGCCACGATGGTCTGCACCTGAGAGAGGACTTCTTGGTCATCTTCGGACGACGTTTGGCCAACGTGTTTCTTCACGTTGACTATAAGAACCCATTCGTTCTCCGTCCGGGTGGTGTCTTCATCCCTAACTACCTGCATAACCCTATCGTGTCTAACCGACCTTTGGTTATTAGTGCGTTCACTGGTGGTAGCTCCCCGCCTATCGGTGGTGGTCTGGCTGACCTTCATGCGGCAGGCGTTATGATTCCTAACGTGATGACCTCTGAGAACAGCCTGACCTTATCGTTTTATCTGGATGCAGACAACGCGGTAATCTATCCGACCATTAATGCAACTGGCACAGACTATAGCTTCAACATGATTCTGGACAATGGTGCTCGTCAGCCTTACTACGCGTCAGATATCGACATTCTCCCGGTGCTGCGTGACCCAACCTACATTGTCAGCGGTAAGGCAATCTCAGGGTCAGATAAGAAGAATCGCCAGACTGAGAACTACAGTCAACTCAATGCGGCCTGTTACTTCCACATCACGACTCGCGGCTGGCACTCCATTAGCTTCGTCACTGGGGCCAACTCAGGGATTGCGAGCGTTGAGGGCCTGTTATGTGAGGACTGGATTAGCGTTAAGAACAATGACGTTTATGGTGGGCTGACTGGTACTCTTGAGGTTAAATCTGACGGTTCCCATACGGCGACCGGACGTGTCCTTGGTGTGACCAATCCATCCACGGGTGTCTATGATGTTCAGATTGCAGCCTTGAGTCCGAACGTCTACGAAGTCACATCAGAAGCATCTCAGGACTCTGCACCACTGACTATGCGCGTCCTCTATAAGACCAACTCTCAGTTTCGTGTTGAGTTTTGGGGAGCAGGTGACGTTAAGGTTGCACCAACTGAGTTTACCCTTCGTGTACATGGGGGCCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
474e6f37071b5b3f56fd85903c4529ddaa4f9c9d8d095f88a3371de8dca30a34
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7085
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Lytic phages isolated from Egypt for biocontrol of potato soft rot caused by Pectobacterium carotovorum Elhalag,K., Nasr-Eldin,M., Huang,Q., Rabab,A.-E.-A. and Ahmad,A.A. 2024 — GenBank