Protein

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Genbank accession
UPT53432.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MAIQPDLVGTITLSGGSTAFTWTGTSLVSAAIQAGDEIRLPGKAMVLTIATVTSATAGTLTDNCPAAAAGSGQAARVRYQSDLSRVAAQTRQLIELLSGKGFFKYDAAGSLAERDDYDTRPQGFAYLNIDTDPMELYVKASDASGDWAGPVSYATGPTGPAPNMSVGTTDTGAAGTDADVTIDGTNPNYTLNFTIPRGDTGVQGPLGPAGFRVSAVGELTDRTTYDAEDAGFSFVATDGDGVSITEPVVFVKLSSASANWSDAVPFGASAIGSMAESVYDPDEIGMDVFGGGLRLPTRSAIAAMSIAASVGYIQTAGDVAPGDGGHTLFKRVGVAPSHQFYEPSADGSYFEGAPVPSISLRALGGVGDGATFEDISALNAKLAGAAAVGIRVFDGLDRTYRLDGATGLAIPQGCTLRNFRLDAQEMDVASRAINVTGTQGSAVSLTADCLYGTYTWACDTTGLTAGDLVFLGTDKIWNSTLKYGEMNRIYSVDGPTSLTLTTAVSNDFLVSDSAILRKLSGAAGAALEDFEMIGSGAGGEQYALDLRYASSLMLSRGVIRKFDDRCIHAVQCMDVKLDDMDLREATRASFSYGVALFGCRNFEWGGGSATKFRHAVDASSSVQGITINTKVHHVELRRVIGGLGAHYGSMDLDYSHNTFYGDDPQGTNIAAISVEGANLTAVGNRFRNVSDIAISHTPNQTGAKKPSRTVASLNDFENVPKAAIRIDPLSSAEIGAVSVVGNTGRTIGAELVSEGAIYIRSGAAPVKGVAVVGNGFADLRCHGLVLSAVDPNPIDVAALGGNAFAIEASLQATKSAIRSTGTGLVRHQAMVGNASDTETTGYLSQGDKEVILGNAAFDASIAVSSTATDRNLGPTYTLNKVLSGAVSTGFYEFDVGKFLRRKVRIIGIYGKTSAGSATVRLGVDGVSSGHTSININTTLGGTAYSTPPIVDGATSIKTLSLQVASVSSASDLDVQIIYQDL
Physico‐chemical
properties
protein length:981 AA
molecular weight: 101382,92660 Da
isoelectric point:4,83083
aromaticity:0,07136
hydropathy:0,02926

Domains

Domains [InterPro]
DC_1037
STR
130–260
DC_1037 IPR011050
UPT53432.1
1 981
Architecture
STR
STR
STR 130-260 | STR 466-788 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UPT53432.1
1 981
Domain Start End Length (AA) Confidence
N-terminal 1 372 372 0,9948
Central domain 373 858 487 0,9837
C-terminal 859 981 122 0,9637
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-372
Central
373-858
C-terminal
859-981

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage Yong-M2-251
[NCBI] 		2928846 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. PCC 7002
[NCBI] 		32049 Cyanobacteriota > Cyanophyceae > Chroococcales > Geminocystaceae > Picosynechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UPT53432.1 [NCBI]
Genbank nucleotide accession
OM868082.1 [NCBI]
CDS location
range 34301 -> 37246
strand -
CDS
ATGGCCATTCAGCCCGATCTTGTCGGCACCATCACGCTCTCCGGTGGCTCGACGGCGTTTACGTGGACCGGTACGTCGTTGGTCTCGGCCGCAATCCAGGCCGGCGATGAAATCCGCCTGCCGGGCAAGGCGATGGTGCTGACCATCGCAACGGTGACCAGCGCCACGGCCGGCACGTTGACGGACAATTGCCCAGCCGCGGCGGCCGGATCGGGGCAGGCCGCGCGCGTGCGCTACCAATCGGACCTCTCGCGGGTTGCTGCGCAGACGCGGCAGTTGATCGAACTGCTGAGCGGCAAGGGCTTCTTCAAGTACGACGCCGCCGGATCGTTGGCGGAGCGCGACGACTACGACACGCGACCGCAGGGCTTCGCCTACTTAAACATCGATACCGACCCGATGGAGCTTTATGTCAAGGCTTCGGATGCCAGCGGCGATTGGGCCGGGCCGGTGTCTTACGCTACTGGTCCGACTGGCCCCGCACCGAATATGTCGGTCGGCACGACGGACACTGGCGCCGCGGGGACGGATGCTGACGTCACAATTGACGGCACCAATCCCAACTACACGCTCAACTTCACTATTCCGCGTGGCGACACCGGAGTGCAGGGGCCGCTTGGCCCCGCCGGGTTCCGCGTAAGTGCCGTTGGCGAGTTGACAGACCGCACCACCTACGATGCAGAGGACGCGGGCTTTTCGTTTGTTGCCACGGACGGCGACGGCGTGTCGATTACGGAGCCGGTCGTTTTTGTCAAGCTTTCTTCTGCATCAGCAAATTGGTCTGACGCCGTGCCGTTCGGCGCGTCCGCCATCGGCTCGATGGCTGAAAGTGTCTACGATCCCGACGAGATCGGCATGGATGTGTTCGGCGGCGGCCTCAGGCTTCCGACGCGCAGCGCAATCGCGGCCATGTCGATTGCGGCCAGCGTGGGCTATATCCAGACTGCAGGCGACGTGGCTCCTGGCGATGGGGGGCACACTCTCTTCAAGCGGGTAGGGGTTGCACCTAGCCACCAATTTTATGAACCCTCGGCAGACGGTTCCTATTTCGAGGGTGCGCCGGTCCCGTCCATTTCACTGCGCGCGCTCGGCGGCGTAGGGGATGGCGCCACGTTCGAAGATATTTCTGCGCTGAATGCCAAGCTCGCCGGGGCTGCGGCAGTCGGCATCCGGGTCTTCGACGGCCTCGACAGAACTTATCGCCTGGACGGTGCCACGGGGCTGGCGATCCCGCAGGGGTGCACGCTGCGAAACTTTCGCCTTGATGCGCAGGAGATGGATGTTGCTTCGCGAGCCATTAACGTCACCGGCACGCAAGGGTCTGCGGTTTCTCTCACTGCAGATTGCCTCTATGGGACCTACACATGGGCTTGCGACACGACAGGCCTCACGGCGGGGGACCTGGTTTTCCTAGGCACAGACAAAATCTGGAACTCGACCCTGAAATATGGGGAGATGAACCGAATCTATTCGGTCGATGGGCCAACGAGCCTCACCCTCACCACCGCCGTGTCCAATGACTTCCTAGTCTCAGATTCGGCGATCTTAAGGAAATTGAGCGGTGCGGCCGGCGCAGCTCTTGAAGACTTCGAGATGATTGGGTCTGGGGCTGGCGGCGAGCAATACGCCCTCGATCTCCGGTATGCGTCCAGCCTCATGCTCTCGCGCGGTGTCATTCGGAAATTCGATGATCGCTGCATCCATGCGGTTCAGTGCATGGACGTGAAACTTGACGACATGGACCTACGCGAGGCGACGCGAGCCAGTTTTTCCTACGGTGTTGCATTGTTTGGTTGCCGCAATTTCGAGTGGGGCGGCGGGTCTGCTACCAAGTTTCGCCATGCGGTTGATGCCTCGTCAAGTGTGCAGGGGATCACGATCAACACTAAGGTCCATCACGTCGAACTTCGCCGCGTCATCGGTGGGCTTGGGGCGCATTACGGGTCGATGGACCTCGATTATTCGCACAACACGTTCTACGGCGACGATCCGCAGGGAACCAACATCGCCGCAATCTCGGTCGAAGGAGCGAATCTTACGGCGGTCGGCAATCGCTTCCGCAACGTGTCAGACATCGCGATCTCTCACACCCCAAACCAGACTGGCGCGAAGAAGCCGTCCAGGACCGTCGCATCTCTCAACGACTTTGAGAACGTTCCGAAGGCCGCAATCCGCATTGACCCGCTGTCGTCGGCTGAAATCGGGGCGGTCTCCGTTGTTGGCAATACTGGGCGCACTATCGGCGCAGAGCTTGTGTCCGAGGGCGCGATCTATATCCGGTCCGGCGCAGCTCCGGTTAAGGGTGTCGCTGTGGTCGGCAACGGATTTGCTGATCTCCGATGCCATGGTTTGGTGTTGTCGGCTGTTGACCCGAACCCGATCGATGTCGCGGCGCTTGGAGGCAACGCTTTTGCGATTGAGGCCAGCTTGCAAGCGACGAAGAGCGCTATCCGCTCGACCGGGACTGGTCTCGTCAGGCATCAGGCCATGGTGGGCAACGCATCAGACACCGAGACAACCGGCTATCTCTCGCAAGGCGACAAAGAGGTGATCTTGGGCAATGCGGCATTTGACGCCTCAATCGCCGTATCATCGACCGCCACTGATCGAAACCTTGGCCCCACATACACCCTGAACAAGGTGCTTTCTGGCGCCGTATCGACGGGGTTCTATGAATTTGATGTCGGCAAGTTCTTGCGCCGAAAGGTCCGGATCATCGGCATCTACGGGAAGACGTCAGCCGGCAGCGCTACGGTGCGCCTTGGCGTCGATGGGGTGAGCTCCGGTCACACGTCGATCAACATCAACACGACGTTGGGGGGCACAGCATATAGCACGCCACCGATTGTCGATGGCGCGACCTCGATTAAGACGCTGTCTCTACAGGTGGCCTCTGTGTCGAGCGCGTCCGATCTCGACGTCCAGATCATCTACCAGGACTTGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
01dcbdaf66378849272ee9a6a548aa7c8287aaa971b3ec470433802338a077c8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8108
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic analysis of Synechococcus cyanophage Yong-M2-251 Pan,L., Li,D., Lin,W., Qu,C., Cai,R., Qian,M., Wang,F., Zhou,Q., Liu,W. and Tong,Y. 2024-11 — GenBank