Protein

View in Explore
Genbank accession
QBO65307.1 [GenBank]
Protein name
putative long tail fiber, proximal subunit
RBP type
TF
Evidence RBPdetect
Probability 0,89
Protein sequence
MSNNNTYQHVSNESIYVEFDPVGSNFPDTVTNVQAALAAISPSGVNGVPEATTTTPGIIQIATPQEVIDGLDNSKAVTPATLNARLQYPNATETQYGLTRYATEDEAVTGTIDDASITPLKLNQKIDNVFQTKVSTEATNGVIKISTSAAALAGSDDTTAMTPLKTQQLAIKLISQIAPNNGDATESITGVVRLATVAQAQQGTLREGYAISPYTFMNSVASETNKGVVKLGTQTEVNSNNSSVVVTGATLNGRGATTSLRGVVRLTTQAGSQSGGDGSSALAWNADVIHQRGGQTINGTLRINNTLTVGSGGANITGNVNMTGGYIQGNRIVTQNELDRILPVGAITMWAADSLPSSDWRFCHGGTVSASECPVYASRIGTRYGGSSSNPGLPDMRGLFVRGSGRGNHLTNPNVNGNDQFGKPRLAVGCTGGYVGEVQKQQMSYHKHAGGFGEHDDSGAFGNTRRSNFVGTRKGLDWDNRSYFTNEGYEIDPASQRNSKYTMNRPELIGNETRPWNISLNYIIKVK
Physico‐chemical
properties
protein length:527 AA
molecular weight: 55769,00340 Da
isoelectric point:6,40862
aromaticity:0,06072
hydropathy:-0,39905

Domains

Domains [InterPro]
DC_0176
STR
1–450
DC_0176
SSF69349
STR
247–327
SSF69349 IPR037053 IPR044916
G3DSA:2.10.280.10
Unmapped
247–287
G3DSA:2.10.280.10 G3DSA:2.160.30.10 SSF88874
IPR015173
STR
247–327
IPR015173 IPR011083 IPR027448
QBO65307.1
1 527
Architecture
STR
ATT
STR
STR 1-330 | ATT 331-401 | STR 402-526 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_G53
[NCBI] 		2502416 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBO65307.1 [NCBI]
Genbank nucleotide accession
MK327943 [NCBI]
CDS location
range 91633 -> 93216
strand +
CDS
ATGAGTAATAACAATACATACCAACACGTTTCAAATGAATCTATTTACGTTGAATTCGACCCCGTAGGGTCGAATTTTCCAGACACAGTCACTAATGTCCAAGCCGCATTAGCTGCCATTTCTCCTTCAGGTGTTAATGGCGTACCGGAAGCAACAACTACTACACCTGGAATTATTCAAATAGCTACTCCACAAGAAGTTATTGATGGATTAGATAATAGTAAAGCTGTTACTCCGGCAACACTGAATGCTCGTCTACAATATCCTAATGCAACCGAAACTCAATATGGCTTAACTCGTTATGCTACTGAAGATGAAGCAGTAACAGGAACTATTGACGATGCATCAATTACTCCGCTTAAATTGAATCAAAAAATAGACAATGTATTTCAGACAAAAGTGTCAACAGAAGCAACAAATGGTGTAATTAAAATTTCAACTTCTGCTGCGGCATTAGCCGGTTCTGATGATACGACGGCAATGACTCCGTTAAAAACGCAACAATTAGCAATTAAACTTATTTCGCAAATTGCTCCAAATAATGGTGACGCAACCGAATCTATTACTGGTGTTGTTCGTTTGGCTACAGTTGCTCAAGCGCAACAAGGCACCCTTCGTGAAGGCTATGCAATTTCACCTTATACCTTTATGAATTCAGTAGCATCAGAAACTAATAAAGGTGTCGTTAAACTAGGGACACAGACCGAAGTAAATAGTAACAACTCTTCAGTTGTAGTGACCGGCGCAACATTAAACGGGCGTGGGGCTACAACTTCTTTACGTGGAGTTGTTCGTTTAACTACACAAGCGGGTAGCCAATCAGGTGGTGATGGTTCTTCTGCCCTTGCTTGGAATGCTGATGTTATCCACCAACGAGGCGGACAAACTATTAATGGCACGCTTCGCATTAATAATACGTTGACGGTTGGTTCTGGTGGCGCTAATATAACGGGTAATGTCAATATGACCGGTGGTTATATTCAAGGCAATCGTATTGTGACTCAAAATGAATTGGACCGAATTCTTCCAGTTGGCGCTATTACAATGTGGGCTGCAGATAGTTTACCGAGTTCTGACTGGCGCTTCTGTCATGGTGGGACCGTTTCTGCTTCAGAATGTCCTGTATATGCTTCCAGAATTGGGACACGATATGGTGGTAGCTCTTCTAACCCAGGCTTGCCTGATATGCGTGGATTATTTGTTCGCGGCTCAGGTCGTGGTAACCATTTAACTAACCCTAATGTTAATGGTAATGACCAATTCGGTAAGCCTCGTCTGGCGGTAGGTTGTACCGGTGGATATGTCGGTGAAGTGCAAAAACAACAGATGTCGTATCATAAGCATGCTGGTGGTTTTGGCGAACATGACGATTCCGGTGCATTTGGTAATACTCGTCGTTCAAACTTTGTTGGTACTCGTAAAGGACTTGACTGGGATAACCGTTCATATTTTACTAACGAAGGATATGAAATTGATCCAGCGTCTCAGCGTAACTCTAAATATACCATGAATCGTCCAGAATTAATTGGAAATGAAACTCGTCCATGGAATATTTCTTTAAACTATATCATTAAGGTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c300782579b627006dbc70ffe482bb4bc23dbff7051bf25e914e4c8b796360f8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6987
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Still something new to discover - new insights into E. coli phage diversity and taxonomy Korf,I.H.E., Adriaennsens,E., Dreiseikelmann,B., Kropinski,A., Nimtz,M., Meier-Kolthoff,J.P., Rohde,M., van Raaij,M. and Wittmann,J. 2019-05-17 — GenBank