Protein

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Genbank accession
YP_010682342.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAEFWSNNDRGYRIRLWVDQVGQDIQNNTSQVRLRLALLNTTTTFAQYQCNAFVDFNGQRLNWSGSPSMLGWNQTIQLIDQTITVRHADDGSGVFGVHAHFNGSGGWSPGNLDIGSQTITLTTIPRGSTVSVSDGVIGKQVDIAINRKIGGATHTLRYALGNKQGKIADNVGTSYKWTIPEDFANDIPNSTSGWGTIYVDTYINGNFIQTQSTVLTASIDTNLLKPSFTGFTLTDANPVSQRIIPEQKYFVSIMSLVKVTFNGAQAKNGATITGYYAEIVGANNSVSTNGGVFREVSVNQDTEMTLRGRVQDSRGIWSDWIETKITFLFYFSPALRFEVKRSDKKLDVLVIKRFAKIAPLTVNGVQRNTMKLTFTTRKVNSDNEVPDNGQAGGSWSQVSEFNASDAPLGNRYPADTSYIVTGKLEDEFTSAPFQDTVPTDEVIATYERKGVGIGKYREFGALDVAGDIYANNSQIQQYQLTSNNGAPKWVDGKPNVENANLLDEPGQYYLDASATGNPNSQWGYLFHYSNYGKNIDGFKEAIQTFWSNTGQLFFRHHRWSKIIDDWEPWVDYTPKKEPIVKKAIQIGYGLTANLVRKSNIVTLSIIRGTHSVDEGEYRSLDEKIPYGFRPCVQTHLVVHKNILTVHKSSAVWHLEPSGSMFFSNSDKDTAVYAGTVTYITEDEYPSN
Physico‐chemical
properties
protein length:687 AA
molecular weight: 76409,21650 Da
isoelectric point:6,21349
aromaticity:0,11063
hydropathy:-0,41033

Domains

Domains [InterPro]
IPR008577
STR
1–638
IPR008577
G3DSA:2.60.40.1830
RBD
576–681
G3DSA:2.60.40.1830
YP_010682342.1
1 687
Architecture
STR
RBD
STR 1-638 | RBD 639-681 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010682342.1
1 687
Domain Start End Length (AA) Confidence
N-terminal 1 22 22 0,0016
Central domain 23 250 229 0,5043
C-terminal 251 687 436 0,6233
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-22
Central
23-250
C-terminal
251-687

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage CHPC1042
[NCBI] 		2365016 Uroviricota > Caudoviricetes > Aliceevansviridae > Brussowvirus CHPC1042 >
Host Streptococcus thermophilus
[NCBI] 		1308 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010682342.1 [NCBI]
Genbank nucleotide accession
NC_071061 [NCBI]
CDS location
range 19438 -> 21501
strand +
CDS
ATGGCTGAATTTTGGAGTAATAATGACCGTGGATATCGTATCCGTCTTTGGGTTGACCAGGTTGGTCAAGACATCCAAAACAATACAAGTCAAGTTAGATTGCGATTAGCGTTATTAAACACAACGACTACTTTCGCTCAATATCAATGTAACGCATTTGTTGATTTTAACGGTCAGCGATTGAACTGGTCGGGTTCTCCTAGTATGCTAGGCTGGAATCAAACAATCCAATTGATAGACCAAACAATAACTGTTAGACATGCTGATGATGGGTCTGGTGTCTTCGGTGTACACGCTCACTTTAATGGGTCGGGTGGTTGGAGTCCCGGAAACCTAGACATAGGAAGCCAAACCATAACACTGACGACAATTCCAAGAGGAAGCACGGTAAGTGTCTCAGATGGGGTTATCGGAAAACAAGTAGATATCGCTATCAACCGAAAAATAGGTGGCGCTACACATACACTACGCTACGCTTTGGGAAATAAACAAGGTAAAATTGCCGACAACGTTGGAACGTCGTATAAATGGACAATCCCAGAAGATTTCGCTAACGATATACCAAATTCAACAAGTGGATGGGGTACTATATATGTAGATACTTATATTAATGGAAATTTCATTCAAACGCAGTCAACCGTCCTAACGGCAAGTATTGACACGAACCTCCTAAAACCATCATTCACGGGATTCACGTTGACAGATGCTAATCCAGTATCTCAAAGAATAATCCCAGAGCAGAAGTATTTTGTATCCATCATGTCGCTTGTGAAAGTTACATTTAATGGAGCGCAAGCCAAGAACGGAGCTACCATAACTGGGTACTATGCTGAAATCGTTGGTGCTAACAACTCTGTTTCAACTAACGGCGGGGTGTTCCGTGAGGTTTCTGTTAACCAAGACACTGAAATGACCTTAAGAGGAAGGGTCCAAGACAGTCGTGGGATATGGTCTGATTGGATAGAGACGAAAATAACGTTTCTATTCTACTTTAGTCCAGCACTAAGATTCGAGGTTAAGAGAAGCGATAAGAAGTTAGATGTACTAGTTATTAAGAGATTCGCTAAAATCGCACCGCTGACTGTCAATGGCGTTCAGAGAAACACAATGAAGCTGACTTTCACCACACGAAAAGTCAATTCAGATAATGAAGTTCCAGATAATGGACAAGCTGGTGGAAGTTGGTCACAGGTTTCTGAATTTAACGCATCTGATGCTCCCCTTGGAAATCGCTATCCAGCTGATACATCTTATATCGTTACAGGTAAATTAGAAGATGAGTTTACAAGCGCTCCATTTCAAGACACTGTTCCAACGGATGAAGTTATTGCGACATATGAAAGGAAAGGGGTAGGGATTGGTAAGTACCGAGAGTTTGGCGCTCTTGATGTTGCTGGCGACATCTACGCTAACAACAGTCAGATTCAGCAATATCAGCTAACTAGTAATAACGGCGCTCCGAAATGGGTAGATGGAAAACCTAACGTTGAAAATGCTAATTTGCTAGACGAACCCGGGCAGTATTACCTTGATGCTTCTGCAACTGGTAACCCTAACAGTCAGTGGGGTTACCTATTCCATTACAGTAATTATGGGAAGAATATTGATGGTTTTAAAGAAGCTATTCAGACTTTTTGGAGTAATACTGGTCAGCTATTCTTCAGGCATCACAGATGGTCTAAGATAATCGACGACTGGGAGCCGTGGGTTGACTACACACCAAAAAAGGAACCCATTGTTAAGAAAGCAATTCAAATTGGATATGGTTTGACAGCAAACCTTGTGCGAAAGTCAAACATTGTAACCTTAAGCATAATCAGAGGTACCCATTCAGTTGATGAAGGTGAGTACAGGAGTTTAGATGAAAAAATACCATACGGATTCAGACCCTGTGTACAGACACACTTAGTTGTCCATAAAAATATACTAACTGTTCATAAATCAAGTGCAGTATGGCATCTTGAACCTAGCGGTAGCATGTTTTTTTCAAACTCTGATAAAGATACCGCTGTGTACGCTGGGACAGTAACTTATATCACTGAAGATGAATACCCAAGCAATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
5b309d627ae299c424f20e1a9887c0349796b1f7b20cc2cc34c0e6f0ba00e176
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8772
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A comparative genomics approach for identifying host-range determinants of bacteriophages infecting Streptococcus thermophilus Szymczak,P., Rau,M.H., Monteiro,J.M., de Pinho,M.G., Filipe,S.R., Vogensen,F.K., Zeidan,A. and Janzen,T. 2019-05-29 — GenBank