Protein

View in Explore
Genbank accession
XMN81926.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGKSGGVAGGASIDYATNTVTGQTQKTLPAILRDLGFEPTSFDFTTGGTLTAADRNKVVFDPVSSTWYSWAGALPKVIPAGTNPLLDANWRPQTDPDLRADLASTTINKGASLIGTTSGDTVQTEIDKIKLKFNSFSSLRSSEGSLIGDYALLTGWHASYQGYGAGVFKCVDKTGLTDDGGTIAVGSTYAWKRITGPGDATEFGVVPNAGSTFDNKDYILAAAATGALLLPAGDIYTTFFTLTDTYLVRGNFTNIREIEAPGVTDFIVHCSRNGTWEGRIDGIVWEDVSIFPIDTHRGFHTYFTTLGNMRSVRVKGGIGSWIEGSSDWSFFQCEFVESKGRENILITPKVDEQGTIGGGLVFNKCFIARSAKDGASITQMPSVWFRDSVIYHNADTGLRFNTDRTTYPGPEFTVNKVTGCDIDDNYYAGVQITGGRYVDFSNNWVSSGRQNSGPGLSIDNSIGINIESNSVYLCGQNGITVKDSSFGSVSNNNSNDNKNTGIRITNCNRLSVCGNIACGETPLGAFPKPQEEGIRIEGDRISSYGNICTGNSINNYSNVATNKQDGLNITT
Physico‐chemical
properties
protein length:599 AA
molecular weight: 64136,38230 Da
isoelectric point:5,01152
aromaticity:0,09516
hydropathy:-0,24875

Domains

Domains [InterPro]
DC_1953
STR
1–599
DC_1953
G3DSA:2.10.10.80
ATT
66–133
G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
77–112
IPR040775 IPR011050
IPR006626
Unmapped
408–430
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626
IPR039448
ENZ
444–582
IPR039448
XMN81926.1
1 599
Architecture
STR
ATT
STR
STR 1-65 | ATT 66-133 | STR 134-599
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMN81926.1
1 599
Domain Start End Length (AA) Confidence
N-terminal 1 241 241 0,9945
Central domain 242 588 348 0,9955
C-terminal 589 599 10 0,2369
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-241
Central
242-588
C-terminal
589-599

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage W5_chr3
[NCBI] 		3385020 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMN81926.1 [NCBI]
Genbank nucleotide accession
PP996006.1 [NCBI]
CDS location
range 38656 -> 40455
strand -
CDS
ATGTCAAGCGGATGCGGTGATGTTTTAAGTCTGGCGGATTTACAGACCGCCAAGAAGCACCAGATTTTTGAGGCCGAAGTTATCACAGGAAAATCAGGTGGTGTAGCTGGGGGCGCGAGTATTGATTACGCGACAAACACTGTTACGGGACAAACCCAAAAGACATTGCCGGCTATACTGCGCGATTTGGGTTTTGAACCAACATCTTTTGACTTTACCACTGGGGGGACATTAACAGCAGCCGACCGTAACAAAGTGGTGTTTGACCCTGTAAGTTCGACCTGGTATTCGTGGGCTGGTGCGCTGCCGAAGGTTATCCCGGCTGGAACAAATCCGCTGCTTGATGCTAACTGGAGACCCCAAACAGACCCAGATTTGAGGGCAGACCTGGCGAGCACCACAATTAACAAAGGCGCATCTTTAATTGGTACTACATCCGGCGATACAGTACAAACAGAAATTGATAAAATTAAATTGAAATTTAATTCATTTTCAAGCTTAAGAAGCTCGGAAGGTTCTCTTATCGGCGACTACGCGCTACTTACCGGATGGCACGCTTCCTATCAGGGGTATGGCGCCGGCGTATTTAAATGTGTAGATAAAACAGGGTTAACTGACGATGGGGGTACTATTGCAGTAGGCTCTACGTATGCGTGGAAACGTATAACGGGCCCTGGTGATGCTACCGAATTTGGTGTTGTACCTAATGCCGGAAGTACATTCGATAATAAGGATTATATTCTAGCTGCGGCAGCTACAGGGGCACTTCTTCTCCCTGCGGGCGATATTTACACAACATTCTTCACCCTTACTGATACCTACCTTGTAAGAGGTAATTTTACCAATATTCGCGAAATTGAAGCCCCTGGGGTTACAGACTTTATCGTCCACTGCTCCAGAAACGGGACATGGGAAGGGCGAATTGACGGAATTGTATGGGAGGATGTTTCTATATTCCCTATTGATACCCATAGAGGTTTCCATACCTATTTTACTACCCTTGGTAATATGCGTAGTGTTAGAGTTAAAGGTGGTATTGGCTCCTGGATTGAGGGATCTTCTGATTGGTCATTTTTTCAATGTGAATTTGTTGAGTCAAAGGGAAGAGAAAATATTTTAATAACACCAAAAGTAGATGAGCAGGGGACTATAGGCGGCGGACTGGTATTCAACAAATGCTTTATCGCGAGAAGCGCCAAGGACGGGGCCAGTATAACTCAAATGCCATCTGTTTGGTTCAGGGACTCTGTTATTTATCATAACGCAGACACAGGACTTCGATTCAACACAGACCGTACAACATACCCAGGGCCTGAATTTACTGTTAACAAGGTTACTGGTTGTGACATAGATGATAATTACTATGCGGGGGTACAGATAACTGGTGGTCGTTATGTTGATTTCTCAAACAACTGGGTAAGTTCTGGTCGTCAAAATTCAGGCCCTGGATTAAGTATCGATAACAGTATAGGCATCAATATTGAAAGTAACAGCGTTTACCTTTGCGGCCAAAACGGAATAACTGTAAAAGATAGTAGCTTCGGAAGTGTTAGCAACAATAACTCTAATGACAATAAAAATACTGGAATACGCATTACTAACTGCAACCGACTTTCTGTCTGCGGTAATATAGCATGTGGCGAAACCCCATTAGGAGCTTTTCCAAAACCACAGGAAGAGGGTATCCGTATTGAAGGGGATAGAATTTCTTCTTACGGCAATATCTGCACCGGCAATTCAATTAACAACTACTCCAATGTAGCGACAAACAAGCAGGACGGGTTGAATATCACCACTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
a9e9927eee52940741f3afeef7c62b322ac7a1d888617affed9fca5c21d3a1ca
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8727
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50