Protein

View in Explore
Genbank accession
WVX90413.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
Protein sequence
MEFTVVQGNKTLNLNNKKPLRSVTKAEHRQSLLSEDVINITVESKTPLALQVGNHIEYENRRYTLNSAPKVKKEQGYYTYDLVFEGVQYLLRDKVYFNLDAQGFQNTADFPLTGEINIFLTTLITNINSISDFTWVLGEYPQNTETKTLTFNNENCLAVLQKICQEYDTEFEIKQDLERKSYTLNIKKIGETLNQTFEYGKGNGLYSLSRENANDNVVTRLYVFGSTNNIKSGYRDYSQRLRLPISHGKDYIQDDNKVSLFGLKEGVKNFDDIKPTFKGIVSGVTNLENGSQEIEVSNMDFDLNETDSNGTKYLLNDTPAKLHINKGNLAGYEFELLKNGGYNHATKTFRVKQFTDERGQKFPEAGSVFSFAVGDEFTLLDIAMPEQYITNAENKLLEEGQKEYEKQSVNNLKYNLELDPLYLQQIGANTSIFFKIGDYIRVIDEPLKIDKTTRIVDITRDLLDEYNYKIGIADTYEISFVASLLTDIKDTKTVIKTQEQINRRNYLSGYRNQKEFEENVFDADGNFDPTKIRHQSIEAYMLSTGARSQQFALENISLNPNIEGNPARTFISGGKLVHFSLEDDIREWSILPYSRNDLLNQVYYVYAKCSRGSSMGVWHITTEQIRFDSRSDYYYFLCYLLYTPKDGKREAEAMYGNVFMHGGQITAGRIKSLNGQTYFDLDSGEIAGTIKFKSGNGYVEVGSAIQQAVDAVSVGGRNLVRESDVFRNGISADGIGSNITSEGYLRVISSISNNNWHTNWFSRIDEIEEQMTEGETFTITFWVKRLSGYGKPTIYLKDGMGYFYLQGELNNSEFKPLSYTGTWKKAQSLHPHLGWAPANGEFVIKCWKIEKGNKPTDWTPNPQDIEQEIIAVKSKVNQIDN
Physico‐chemical
properties
protein length:881 AA
molecular weight: 100519,26990 Da
isoelectric point:5,33107
aromaticity:0,11464
hydropathy:-0,55505

Domains

Domains [InterPro]
DC_0279
STR
3–881
DC_0279
IPR007119
Unmapped
135–257
IPR007119
WVX90413.1
1 881
Architecture
STR
STR 3-881
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Riemerella phage vB_RanS_GDF21
[NCBI] 		3113642 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Riemerella anatipestifer
[NCBI] 		34085 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WVX90413.1 [NCBI]
Genbank nucleotide accession
PP067980.1 [NCBI]
CDS location
range 1 -> 2643
strand -
CDS
ATGGAGTTTACAGTAGTACAAGGAAATAAGACCCTTAACCTTAATAATAAAAAGCCCTTGCGTTCAGTTACCAAAGCTGAGCATAGACAGTCTTTGCTATCAGAAGATGTAATAAATATTACTGTAGAAAGTAAAACTCCTCTTGCTTTGCAAGTGGGCAACCATATAGAATATGAGAACCGAAGATATACACTCAACTCTGCACCAAAGGTAAAAAAGGAGCAGGGGTATTATACCTATGATTTAGTTTTTGAGGGCGTACAGTATCTATTGAGAGATAAGGTGTATTTCAACTTGGACGCTCAAGGCTTCCAAAATACGGCGGATTTTCCTTTAACGGGAGAAATAAACATTTTCCTTACGACGCTAATCACAAATATAAATTCCATTTCAGATTTTACTTGGGTTTTAGGCGAATATCCACAAAATACGGAAACTAAAACGCTGACTTTTAATAATGAAAACTGTTTAGCGGTTTTACAAAAAATCTGTCAGGAATACGATACCGAGTTTGAAATCAAGCAGGATTTAGAGAGAAAATCTTACACGCTCAACATTAAGAAGATAGGCGAAACTTTAAACCAAACCTTTGAATATGGAAAAGGAAATGGGCTTTATTCTTTAAGTAGAGAAAATGCGAATGATAATGTGGTTACTCGGCTTTATGTTTTTGGCTCAACGAATAATATCAAAAGCGGATACCGGGATTATTCACAGCGTTTGCGGTTGCCTATTTCTCACGGAAAGGATTATATTCAGGACGATAACAAAGTCTCTTTATTTGGCTTAAAAGAAGGTGTTAAAAATTTTGACGACATCAAACCTACTTTTAAGGGGATAGTATCAGGCGTTACCAATTTGGAAAACGGCTCGCAAGAGATAGAGGTTTCTAATATGGACTTTGACCTGAACGAAACTGACAGCAACGGAACAAAGTATTTATTAAACGATACTCCCGCGAAGCTCCATATAAACAAAGGAAATTTGGCAGGGTATGAATTTGAGTTGCTTAAAAACGGAGGATACAACCACGCTACTAAGACTTTTAGAGTAAAGCAATTTACAGACGAAAGAGGACAAAAGTTTCCAGAAGCAGGTTCTGTGTTTTCATTTGCTGTCGGCGATGAGTTCACATTGTTAGATATTGCAATGCCCGAACAGTACATTACAAATGCCGAAAACAAACTCCTTGAAGAGGGACAAAAGGAATACGAAAAACAGTCGGTAAATAATCTAAAATATAATTTAGAGTTAGACCCTCTGTATCTGCAACAGATAGGGGCTAATACGTCTATTTTCTTTAAAATAGGAGATTATATCCGTGTGATAGATGAACCGCTTAAAATAGATAAAACGACACGCATAGTAGATATTACGAGGGACTTATTAGATGAATATAATTACAAAATAGGCATTGCGGATACTTACGAAATCAGCTTTGTAGCAAGTCTGCTTACCGATATTAAAGACACTAAAACGGTTATAAAAACGCAGGAACAAATTAACCGACGAAACTATTTGAGCGGCTACCGTAATCAAAAGGAGTTTGAAGAAAATGTTTTTGATGCAGACGGCAATTTTGACCCAACCAAAATTAGACATCAAAGTATTGAAGCTTATATGCTTTCAACGGGGGCAAGAAGCCAACAATTTGCATTAGAAAATATAAGTCTGAATCCTAACATAGAGGGCAATCCTGCAAGAACATTTATTAGTGGTGGGAAATTGGTTCATTTTTCCTTAGAAGACGATATTAGAGAATGGAGCATATTGCCATACAGCCGTAATGATTTATTGAATCAGGTTTATTACGTTTATGCGAAATGTTCAAGAGGAAGTAGTATGGGGGTATGGCATATCACCACCGAGCAGATAAGGTTTGATAGTCGGTCAGATTATTATTATTTCTTGTGTTACTTACTCTACACACCAAAAGACGGTAAACGAGAAGCAGAAGCAATGTACGGTAATGTATTTATGCACGGAGGGCAAATAACGGCAGGGAGAATTAAATCGCTCAACGGACAAACCTATTTTGATTTGGATAGTGGGGAAATAGCAGGAACGATTAAGTTCAAAAGCGGTAATGGTTATGTGGAAGTTGGGAGTGCTATACAACAAGCGGTAGATGCGGTGAGTGTAGGAGGCAGAAATTTAGTGAGAGAATCGGATGTTTTTAGAAATGGTATATCGGCGGACGGAATAGGTAGTAATATAACTTCAGAAGGATACTTGAGGGTTATTAGCTCAATTTCAAATAACAATTGGCATACAAACTGGTTTTCAAGAATAGACGAAATAGAGGAGCAAATGACAGAAGGCGAAACCTTCACTATTACCTTTTGGGTGAAAAGGTTGAGTGGTTATGGCAAGCCTACTATTTATCTAAAAGATGGAATGGGCTACTTTTATTTGCAAGGCGAATTAAACAACTCCGAATTCAAGCCTCTAAGCTATACAGGAACTTGGAAAAAAGCCCAATCATTACACCCTCATTTAGGTTGGGCACCTGCAAATGGAGAGTTTGTCATTAAATGTTGGAAAATTGAAAAAGGTAATAAACCAACGGATTGGACACCCAATCCGCAAGATATAGAGCAGGAAATAATAGCGGTAAAGTCAAAAGTTAATCAAATAGATAAT

Genome Context

Genome Context

Tertiary structure

PDB ID
bb6cd71df25ccf25c1f229202c6166ee04aa77c9d69830bde930cf8a1eb193eb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8191
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome analysis of phage vB_RanS_GDF21 against Riemerella anatipestifer Liu,C., Zhao,Y., Cao,S., Zhu,X. and Li,Y. 2012-06-15 — GenBank