Protein

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Genbank accession
YP_010112635.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MIQVADNFNYRGKKPNFDRDSFDTLYDMKNYSENSLDDGHISYCKETGKHYKFNSNNQSDPTTGKWVELHEAVPADEEDITEQNGTLLLANKTYDKLSFSGLGRVYLRKNIVGDKNVLTLAMINKANTIYVIQYDYDLKEASINIPENCVLLFDGGSLSNGTIHGSLTKISNDSNAKIFDSISFTGTFSVIKIYANWFDNPEDDDISIAFRQAFELNKVNKLDNYSTITVLNGEYNCRGYILMGTSTILDFNGSIIHDLDIDTPLVTTPPFENLSGNEYSRCTIRNGRILSFSSYSNVIIGNTFNRQMIFDPSDNYVVKNRKDAGTLAPIFNISSTISNGTTLITGNTLINPQLYLPAVYTNNPNLIVSKGNNHSIFENKSSDPTLNYMQCGDIKATQNAPIIKNTLNGFNRLQIIKTSLLKKQSEALNHYTFDGTSVFDTDNIKPTWVYKETWYDSNGNPAYAEKTGTLYLRPANVKMGFYYFDTSLNKPIWKNSDTENVWIDATGATV
Physico‐chemical
properties
protein length:510 AA
molecular weight: 57350,33970 Da
isoelectric point:5,23035
aromaticity:0,11176
hydropathy:-0,44510

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010112635.1
1 510
Domain Start End Length (AA) Confidence
N-terminal 1 146 146 0,9800
Central domain 147 414 269 0,9386
C-terminal 415 510 95 0,9475
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-146
Central
147-414
C-terminal
415-510

Taxonomy

  Name Taxonomy ID Lineage
Phage uncultured phage cr6_1
[NCBI] 		2772085 Uroviricota > Caudoviricetes > Crassvirales > Bearivirinae > Afonbuvirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010112635.1 [NCBI]
Genbank nucleotide accession
NC_055894 [NCBI]
CDS location
range 9917 -> 11449
strand -
CDS
ATGATACAGGTAGCTGATAATTTTAACTATAGAGGAAAAAAGCCTAACTTTGATAGAGATAGTTTTGATACATTATATGATATGAAGAACTATTCTGAGAATAGTTTAGACGATGGTCATATATCTTATTGTAAAGAAACTGGTAAACACTATAAGTTTAATTCTAATAATCAGTCAGATCCTACTACTGGTAAATGGGTAGAATAGCACGAAGCTGTTCCAGCTGATGAAGAAGATATAACTGAACAAAATGGCACTCTATAGTTAGCAAATAAAACTTATGATAAATAGTCTTTCAGTGGTTTGGGTAGAGTATATCTAAGAAAGAATATAGTAGGTGATAAGAATGTTCTTACTTAGGCTATGATCAATAAAGCTAATACTATATATGTTATTCAGTATGATTATGATTTAAAAGAAGCTAGTATAAATATTCCAGAAAATTGTGTTTTATAGTTTGACGGTGGTAGTTTAAGTAATGGTACTATACATGGTAGCTTAACTAAAATAAGTAATGATAGTAATGCTAAAATATTTGATAGTATATCTTTTACTGGAACTTTTTCTGTTATCAAAATATACGCTAACTGGTTTGATAATCCAGAAGATGATGATATTTCAATAGCTTTTAGACAAGCTTTTGAATTAAATAAAGTAAATAAACTGGATAATTATAGCACTATTACTGTACTTAATGGAGAGTATAATTGTAGAGGATACATATTAATGGGAACTAGTACTATATTGGATTTTAATGGATCAATAATTCATGATTTAGATATTGATACACCTTTAGTAACAACTCCCCCATTTGAAAATTAGAGCGGAAATGAATACAGTAGATGTACTATAAGAAATGGTAGAATACTTAGCTTTAGTTCTTATAGTAATGTTATTATAGGTAATACTTTTAATAGACAAATGATATTTGATCCATCAGATAATTATGTAGTTAAAAATAGAAAAGATGCTGGTACTCTAGCGCCAATATTTAATATAAGCAGCACTATTAGTAATGGCACTACGTTGATTACAGGTAATACGCTAATTAATCCGCAGTTATACCTACCAGCAGTATACACTAATAATCCTAATTTGATTGTTTCTAAGGGTAATAATCATAGTATATTTGAAAATAAATCTAGTGATCCTACTTTAAATTATATGCAATGTGGAGATATAAAAGCTACACAGAATGCTCCAATTATTAAGAATACATTAAATGGATTCAATAGATTACAAATTATAAAAACAAGTTAGTAGAAAAAACAAAGTGAAGCATTAAATCATTATACCTTTGATGGAACTAGTGTATTTGATACTGATAATATAAAGCCTACTTGGGTTTATAAAGAAACTTGGTATGATAGTAACGGTAATCCAGCATATGCTGAAAAAACAGGTACTTAGTATTAGAGACCAGCTAATGTTAAAATGGGTTTTTATTATTTCGATACATCGTTGAACAAACCTATTTGGAAAAATTCAGATACTGAAAATGTTTGGATAGATGCTACAGGAGCTACTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ec6e2cb11fc9f02c66937e711e423b89e15e95a8fa1f048d3377250045f75df2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6049
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Taxonomic proposal: Crassvirales, a new order of highly abundant and diverse bacterial viruses Shkoporov,A.N., Stockdale,S.R., Guerin,E., Ross,R.P. and Hill,C. 2023-03-24 — GenBank