Protein

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Genbank accession
YP_004322263.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,65
Protein sequence
MSGDLGQFFSLIGKAKKEKEDEFRSLVGEVDIDSMFSQVKESITEDKKKKKKEEKQIQALESWLFTETQLQEKTKEVEKSPVIGVDETEYEKWIEDECDEEEEVTSEVAEETEEEEVEDTVDHALKILETIKSKEEVRENLEDPEILKIRRELEYLKNLVNAQGGGGEVRLEFLDDVDRDTAKVDGKFLKYQSSTGKWVGADASGGGGDSEEASKLVLDARNQNVGYAITIGTPVYQTGYNSGQNRINIEGARASDPSTMPAKGVTITDLANNTNGQILVYGELEGVDTSAFDVADELFVGPNGGLTNTRPTDPGHLVQKIAVVLKKSASNGAILVYGAGRTNDVPNSISVAGIITASSFDGDLTGNADTATYASSAGIATFATTAGVSTNAQGLTGTPDITVNNIVGVAATFTGDVSIAGTLTYEDVTNIDSVGIVTARSGVFFGSPTVSAIITNSATTTTESQTSIDSFSASTYRSAKYQVQITRGSEYQVTEISIVHDGSDSYGTEYATLKTGETLSTFSTDISGGNVRLLATPSSSTSTVFKFTKTAIVV
Physico‐chemical
properties
protein length:554 AA
molecular weight: 59207,43560 Da
isoelectric point:4,44074
aromaticity:0,06498
hydropathy:-0,35289

Domains

Domains [InterPro]
DC_2218
STR
1–314
DC_2218
Coil
Unmapped
94–114
Coil DC_1556
YP_004322263.1
1 554
Architecture
STR
RBD
STR 1-314 | RBD 315-554
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_004322263.1
1 554
Domain Start End Length (AA) Confidence
N-terminal 1 370 370 0,7809
Central domain 371 543 174 0,3260
C-terminal 544 554 10 0,9952
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-370
Central
371-543
C-terminal
544-554

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-SM2
[NCBI] 		444860 Uroviricota > Caudoviricetes > Pantevenvirales > Nilusvirus > Nilusvirus ssm2
Host Synechococcus sp. WH 8017
[NCBI] 		166321 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_004322263.1 [NCBI]
Genbank nucleotide accession
NC_015279.1 [NCBI]
CDS location
range 89712 -> 91376
strand +
CDS
ATGAGCGGAGACTTAGGACAATTTTTTTCACTCATAGGTAAAGCAAAGAAAGAGAAGGAAGATGAGTTCCGATCTCTGGTGGGAGAAGTTGACATCGATTCGATGTTTTCTCAAGTCAAAGAATCAATAACCGAAGATAAGAAGAAAAAAAAGAAAGAAGAAAAACAAATTCAAGCTCTTGAGTCTTGGTTGTTTACGGAAACACAACTTCAAGAAAAAACAAAAGAAGTAGAAAAATCACCTGTCATTGGTGTAGATGAAACTGAATATGAAAAGTGGATTGAAGATGAATGTGATGAAGAGGAAGAAGTAACTTCAGAAGTTGCAGAAGAAACAGAAGAAGAGGAAGTTGAAGATACTGTTGATCATGCACTGAAGATTCTTGAGACAATCAAGTCAAAAGAAGAAGTCAGAGAAAATCTTGAAGATCCAGAAATACTCAAGATTCGCAGAGAACTTGAATATCTCAAAAATCTTGTTAATGCACAAGGTGGTGGTGGTGAAGTTCGCCTTGAGTTCCTTGATGATGTTGATAGAGATACTGCAAAGGTTGATGGTAAGTTCTTAAAATATCAGTCTTCAACAGGTAAGTGGGTCGGTGCTGATGCTTCTGGTGGTGGTGGAGATTCTGAAGAAGCATCTAAACTTGTTCTTGATGCAAGAAATCAGAATGTAGGTTACGCAATAACCATTGGAACACCCGTTTATCAAACAGGTTATAATTCTGGACAAAATAGAATTAATATTGAAGGTGCAAGAGCATCTGATCCTTCAACGATGCCTGCAAAAGGTGTTACAATTACAGATCTTGCTAATAACACAAATGGACAAATTCTTGTCTACGGTGAGTTAGAAGGAGTTGATACTTCTGCATTTGATGTTGCAGATGAATTGTTTGTTGGTCCTAATGGAGGATTAACAAATACAAGACCAACTGACCCAGGTCATTTGGTTCAGAAGATTGCAGTCGTTCTTAAAAAATCTGCTTCTAATGGTGCCATACTTGTTTATGGTGCAGGTAGAACAAACGATGTTCCTAACTCAATTAGCGTTGCAGGTATTATAACTGCAAGTAGTTTTGATGGGGATTTAACTGGTAATGCTGATACTGCAACATATGCATCATCAGCAGGTATTGCTACATTTGCTACCACAGCAGGTGTCTCAACAAACGCTCAAGGGTTAACTGGAACACCAGACATTACAGTCAATAATATTGTTGGTGTTGCTGCCACCTTTACTGGTGATGTTTCTATTGCAGGGACACTGACATATGAAGATGTTACTAATATAGACTCTGTAGGAATAGTAACTGCAAGAAGTGGTGTTTTCTTTGGTAGTCCAACAGTTTCTGCTATCATCACAAACTCTGCTACAACCACGACAGAATCACAAACGAGCATAGATAGTTTTAGTGCATCCACATATAGATCAGCAAAATATCAAGTTCAAATTACAAGAGGAAGTGAGTATCAAGTAACTGAAATTAGCATTGTTCATGATGGAAGTGATTCTTATGGAACTGAATATGCAACACTGAAAACTGGAGAAACATTATCTACATTCAGCACTGATATTTCTGGAGGAAATGTAAGATTGCTGGCCACGCCATCTTCATCAACATCAACTGTCTTTAAATTCACCAAAACAGCAATAGTGGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb31ffb545552458bacb62be79c2ced807476abf66d7da38bdae8b40379004fd
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6983
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage 8017-1 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Erlich,R., Young,S.K., Koehrsen,M., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Borenstein,D., Chen,Z., Engels,R., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heiman,D., Hepburn,T., Howarth,C., Jen,D., Larson,L., Lewis,B., Mehta,T., Park,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., Walk,T., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C., Galagan,J. and Birren,B. 2011-09-23 — GenBank