Protein

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Genbank accession
WAX24457.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,77
Protein sequence
MTNQSDRQADARSSTGTTLTYEGDSLAYFDQQAVPAGDYNGRLLAWINQALGTSYTEINGAKTALAISGGAPTWDGLALLGTAGPPNFMSFSEDVTKFNFLTGGTGAAIPHVFSNGSTITVATKQQVPDIPGGEVGTGFTTTGMCQDPDSTDIWVGNFGNSRGSGGTSTPISIVRLSADGSTLVSQAAAAEAVGGLQGVAFVTSSSPSLRCLAYVDGSSSKICFVNRDGSVPRAALPTSFVPNALTWDDTRQALWVGDANSGDVWLMTLAGAVIGAADFNSWGGPLDHLCVDTSRGTAGYLWSTSGANGSPGILIAWDIAKDQIVDRWLLSDAKAVEGIIATATTVKVVTDGKYHESGSPPNTVAPYNVNEFQTYTIPAITQWRYARVFKSGEVTGPAVAGGRRPYHLILDRGDGDTSADFCIVTRDADASINGLVANMAWSGKPFDPAGTANLGFRLLNGTMANKAFTGSSYTRATFSATFASGANNTQLGTRGTFTPDRAVNVVGTALAVNLGSAALPYKPRLGA
Physico‐chemical
properties
protein length:527 AA
molecular weight: 54616,03350 Da
isoelectric point:5,00464
aromaticity:0,08729
hydropathy:-0,05769

Domains

Domains [InterPro]
SSF63825
STR
106–328
SSF63825
WAX24457.1
1 527
Architecture
STR
STR 106-328 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WAX24457.1
1 527
Domain Start End Length (AA) Confidence
N-terminal 1 53 53 0,5521
Central domain 54 252 200 0,4623
C-terminal 253 527 274 0,6376
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-53
Central
54-252
C-terminal
253-527

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBjS10J-1
[NCBI] 		3003365 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24457.1 [NCBI]
Genbank nucleotide accession
OP596615 [NCBI]
CDS location
range 6267 -> 7850
strand -
CDS
ATGACAAATCAAAGTGATCGACAGGCAGACGCAAGGTCATCAACGGGAACGACCCTCACTTACGAGGGGGATTCTCTCGCATATTTCGACCAGCAGGCCGTTCCGGCTGGCGACTACAACGGCCGGCTACTTGCCTGGATAAACCAGGCTCTCGGCACGTCCTATACGGAAATCAACGGCGCCAAGACCGCGCTTGCGATCAGCGGTGGGGCACCAACCTGGGACGGCCTCGCTCTCCTTGGGACAGCGGGGCCCCCAAACTTCATGTCCTTTTCGGAGGATGTGACGAAGTTCAACTTCCTCACTGGCGGGACCGGCGCTGCTATCCCGCATGTATTTTCCAACGGTTCGACGATCACGGTTGCGACTAAGCAGCAAGTTCCTGACATTCCGGGCGGCGAGGTCGGGACCGGCTTCACCACCACGGGCATGTGCCAAGACCCCGACAGCACGGACATTTGGGTCGGAAACTTCGGTAATTCGCGAGGCTCCGGCGGCACGAGCACGCCAATCAGCATTGTGCGGCTGTCAGCGGACGGTTCGACGTTGGTATCTCAGGCGGCGGCAGCAGAAGCTGTTGGCGGCTTGCAGGGCGTGGCGTTCGTCACTTCGTCTTCGCCCTCGCTGCGCTGCCTCGCCTATGTCGACGGTTCCAGCTCGAAAATCTGCTTCGTGAATCGGGACGGCTCGGTGCCCCGCGCGGCGCTGCCCACGTCATTTGTTCCTAACGCGCTGACCTGGGACGACACACGGCAGGCTCTATGGGTCGGGGATGCCAACAGCGGCGACGTCTGGCTGATGACGCTGGCCGGCGCTGTGATTGGCGCTGCCGACTTCAATAGCTGGGGCGGTCCGCTGGATCACCTGTGCGTCGACACTTCGCGCGGCACCGCCGGCTATCTGTGGAGCACCAGTGGCGCCAATGGCTCGCCGGGTATCCTGATCGCGTGGGACATCGCGAAGGATCAGATCGTGGACCGCTGGCTCCTGTCCGACGCCAAGGCTGTGGAGGGCATTATCGCGACGGCAACGACGGTGAAGGTCGTTACCGACGGCAAGTATCACGAGAGCGGCTCGCCGCCGAACACCGTGGCGCCGTATAACGTCAACGAGTTCCAGACCTACACCATCCCGGCGATCACTCAATGGCGCTACGCGCGGGTGTTCAAGTCCGGTGAAGTGACCGGCCCTGCGGTGGCTGGAGGTCGCCGGCCGTACCACCTCATCCTGGATCGCGGCGACGGCGACACCAGCGCCGATTTCTGCATCGTGACCCGCGACGCCGATGCCTCGATCAACGGCCTGGTCGCGAATATGGCGTGGAGCGGCAAGCCGTTTGACCCCGCCGGTACGGCCAACCTTGGCTTTAGGCTCCTGAACGGGACGATGGCGAACAAGGCCTTTACGGGCTCGTCCTACACGCGCGCCACGTTCTCGGCGACCTTCGCCAGCGGCGCCAACAACACGCAGCTGGGAACACGCGGGACGTTCACGCCAGACCGAGCCGTCAACGTGGTAGGGACCGCGCTCGCGGTTAATCTCGGGTCGGCAGCGCTGCCGTATAAGCCGCGCCTCGGCGCCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
804c75f24178bbab8a91587be359049a3637e24af7e11644b38f9fe2abf23732
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5373
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. — — GenBank