Protein

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Genbank accession
UYE93512.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MVELKRTLGVRSFADIQVYRDGKLRCELKDCGNDLLDGWFNLWLGTWQNSVVNNGVLKLGEGGGPTSYAMTTLESAKLLTSSSYYGYNGDAATYSNETIDEGGNNYVIYTAARVFSYTVGGWTGTLRELGMHVDGWHVNSSGQTKTVQTRIVLPQELVITSDDQLVITYKFKVKMLNEITTEVVQAMYNKVPVDVTVTHTPGKFTDASKILDNYHNSSGYANSDYFFFSNIGVGAKNASLPMNSREITGVMRSHSVDAVNKTRTATITITADKANYAENEIAHLTFNSIDHPSKWSFDPPIPKTNRHIVKMSFVTKVERL
Physico‐chemical
properties
protein length:320 AA
molecular weight: 35544,61240 Da
isoelectric point:6,71174
aromaticity:0,10000
hydropathy:-0,30562

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYE93512.1
1 320
Domain Start End Length (AA) Confidence
N-terminal 1 60 60 0,3381
Central domain 61 259 200 0,0480
C-terminal 260 320 60 0,8987
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-60
Central
61-259
C-terminal
260-320

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage FishSpeaker
[NCBI] 		2985553 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella oneidensis MR-1
[NCBI] 		211586 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella > Shewanella oneidensis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYE93512.1 [NCBI]
Genbank nucleotide accession
OP589283.1 [NCBI]
CDS location
range 113698 -> 114660
strand +
CDS
ATGGTGGAATTAAAAAGAACTCTTGGGGTTCGTTCATTTGCTGACATTCAAGTTTATCGTGATGGTAAACTCAGATGTGAATTAAAAGATTGTGGTAACGATCTTTTAGACGGTTGGTTTAACTTGTGGCTAGGTACATGGCAAAACAGTGTAGTGAACAACGGAGTGTTAAAATTAGGGGAAGGCGGCGGCCCAACTTCTTATGCGATGACTACTCTCGAGTCAGCAAAATTATTAACATCAAGCAGTTACTACGGGTATAATGGTGATGCCGCAACTTATTCAAATGAAACTATTGATGAAGGCGGTAATAATTATGTAATTTATACTGCCGCTAGAGTTTTTTCTTACACAGTAGGTGGTTGGACTGGGACGTTAAGAGAACTCGGTATGCATGTTGACGGGTGGCATGTCAACAGCAGTGGTCAAACAAAGACAGTACAAACTCGAATTGTACTCCCTCAAGAGTTGGTGATTACTTCAGATGACCAATTAGTGATTACTTACAAATTTAAAGTTAAAATGTTAAATGAGATCACTACTGAAGTAGTACAAGCAATGTATAATAAAGTTCCTGTTGATGTAACTGTTACACACACCCCAGGAAAATTCACTGACGCTTCTAAAATACTGGACAACTATCACAACTCTTCAGGGTATGCTAACTCTGATTATTTCTTTTTTTCAAACATCGGAGTGGGTGCCAAAAATGCATCTTTACCGATGAATTCCAGAGAAATAACTGGTGTTATGCGGTCACATAGTGTGGATGCGGTTAATAAGACACGCACAGCAACAATTACCATTACCGCTGATAAAGCCAATTACGCTGAAAATGAAATTGCACATTTAACGTTTAACTCAATAGACCATCCAAGTAAGTGGAGTTTCGATCCACCTATTCCTAAAACCAATCGTCATATTGTTAAAATGAGCTTTGTGACTAAGGTAGAACGGTTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
9de35b48648485360256b63011db663ef704b6a6814437b940ad2ca6a4f2dc19
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7313
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The outer-membrane cytochrome OmcA is essential for infection of Shewanella oneidensis by a zebrafish-associated bacteriophage Grenfell,A.W., Intile,P., McFarlane,J., Leung,D., Abdalla,K., Wold,M., Kees,E. and Gralnick,J. — — GenBank