Protein

View in Explore
Genbank accession
WEM05627.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MGLVSQSVKNLKGGISQQPDILRFSNQGKVQINGWSSETEGLQKRPPTTFLKRLGAVGMFGAKPLIHLVNRDASEQYFMVFTGQGVEVADLKGNRYTVRGYNGYANCEHPRNDLRLITVADYTFVTNRNKLTAMKSTLTHADYGSMTRRCVINVRGGQYGRTLKIHINDVQMAILKMPVGDSVVTTPPQVEQTDAGYIATQMAAQINTNGASRGITAQAGQGWIIVTAAGNDIKTVKTEDGYANQLLNSFIYQVQTFAKLPAQCIDGYLVEITGEASRTGDNYWVRYDSAGQVWKETVKPGIITGFEPTSMPHALVRAADGQFDWKALTWPDRTCGDDLTNPMPSFVEATINDIFFFRNRLGFLSGENVVMSRTSKYFNFFPASVSSISDDDPIDVAISHNRVSILKYAVPFSEQLLLWSDQAQFVLSSQGIMSTKTAQLDLTTEFDVSDGARPFGIGRGVYFAAPRAAYTSLKRYYAVQDVSDVKSAEDISSHVPSYLQNVVYHIHGSGTENFVSVLSDSEENKVYIYKFLYLKEELVQQSWSHWEFGITNRVLAADCIGSYMYLLNERAGVGMCLERIEFTADTVDYMQEPYRAYMDMKKLMTPTRYDEDLNETYASLSDIYGGVPDPLSVFYTLDPQGVLERHTSDNWNVDDRIKLVGNRMGTTFIVGHEYGFQYEFSKFLIKQTADDGTTNTEDIGRLQLRRAWVNYDNSGAFEINVNNGSTQFVYVMAGGRLGTEATLGGLTLGTGQFKFPVTGNAKAQSVTLSSYAPVPLNIIGCGWEGNYMRRSSGV
Physico‐chemical
properties
protein length:794 AA
molecular weight: 88257,36500 Da
isoelectric point:5,67955
aromaticity:0,10957
hydropathy:-0,26990

Domains

Domains [InterPro]
IPR058003
TTP
1–793
IPR058003
WEM05627.1
1 794
Architecture
TTP
TTP 1-793 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WEM05627.1
1 794
Domain Start End Length (AA) Confidence
N-terminal 1 143 143 0,9945
Central domain 144 348 206 0,1176
C-terminal 349 794 445 0,2724
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-143
Central
144-348
C-terminal
349-794

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage vB_PaeM-G11
[NCBI] 		3034915 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Gundecimvirus
Host Pseudomonas sp. D3; Pseudomonas sp. G11
[NCBI] 		528343 Pseudomonadota > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WEM05627.1 [NCBI]
Genbank nucleotide accession
OQ622254 [NCBI]
CDS location
range 25228 -> 27612
strand +
CDS
ATGGGTCTTGTTTCCCAAAGTGTTAAGAACCTTAAAGGAGGTATATCGCAACAGCCGGACATTCTGCGCTTCAGTAACCAAGGTAAGGTACAAATCAATGGATGGTCTTCAGAAACTGAAGGTCTACAGAAGCGCCCACCAACGACCTTTCTGAAGCGCTTAGGTGCTGTGGGTATGTTTGGCGCGAAGCCTCTTATCCACCTCGTGAACCGTGATGCATCCGAACAGTATTTTATGGTGTTCACGGGGCAGGGCGTTGAAGTTGCGGACCTCAAAGGGAACCGCTACACCGTCCGGGGCTACAACGGTTATGCCAACTGTGAGCATCCACGGAATGACCTGCGCTTAATCACCGTCGCTGACTACACGTTCGTTACCAACCGCAACAAGCTGACAGCAATGAAAAGCACGCTGACCCATGCCGACTACGGTTCTATGACGAGGCGCTGTGTAATCAACGTCAGAGGCGGTCAATACGGCCGAACCCTGAAGATACACATCAACGATGTCCAGATGGCAATCCTGAAGATGCCCGTAGGTGACTCTGTGGTGACTACGCCGCCCCAGGTGGAGCAGACGGATGCCGGTTACATCGCTACTCAGATGGCCGCACAGATCAACACTAACGGCGCTTCTCGCGGGATCACCGCACAGGCGGGCCAAGGTTGGATCATTGTGACAGCCGCTGGGAACGACATTAAGACCGTGAAGACCGAGGACGGCTACGCAAACCAACTGCTCAACTCGTTCATCTATCAGGTCCAGACGTTCGCCAAGTTGCCCGCTCAGTGCATTGACGGATACCTCGTGGAAATCACAGGGGAGGCATCACGTACCGGGGATAACTATTGGGTGCGGTATGACTCAGCGGGGCAGGTTTGGAAGGAGACCGTTAAGCCAGGGATCATTACCGGGTTTGAGCCAACGTCTATGCCTCATGCCCTGGTCCGAGCGGCTGACGGTCAGTTTGACTGGAAAGCCTTAACGTGGCCTGACAGAACCTGTGGGGACGACTTAACGAACCCCATGCCCTCGTTTGTAGAGGCGACCATTAACGACATTTTCTTCTTCAGGAACCGCTTAGGTTTCCTCTCGGGTGAAAACGTTGTGATGTCCAGGACCTCGAAGTATTTCAACTTCTTCCCGGCCTCTGTCAGCTCCATCAGTGACGACGATCCTATTGACGTAGCGATCAGTCACAACCGGGTGAGCATCCTAAAGTACGCCGTACCGTTCTCCGAACAGTTGCTGCTGTGGTCCGATCAGGCTCAGTTCGTTCTGTCCTCTCAGGGGATCATGTCGACCAAGACGGCCCAGTTGGACCTAACCACAGAGTTCGATGTGAGCGATGGGGCACGGCCTTTTGGGATTGGGCGGGGTGTTTACTTCGCTGCACCGAGAGCGGCCTATACGAGCCTCAAGCGGTACTACGCGGTGCAGGATGTGAGCGACGTTAAGTCAGCAGAAGACATCTCTTCGCACGTTCCAAGCTATCTGCAAAACGTGGTCTATCACATCCACGGGTCAGGTACTGAGAACTTCGTTTCCGTCCTTTCGGATTCCGAAGAAAACAAGGTCTACATCTACAAGTTCCTCTACCTCAAGGAAGAGCTGGTACAGCAGTCTTGGTCACATTGGGAATTCGGTATTACCAACCGGGTCCTGGCGGCTGACTGTATTGGTTCGTATATGTACCTGCTGAATGAGCGCGCAGGTGTCGGGATGTGCCTGGAGCGCATCGAGTTCACAGCGGACACCGTGGACTACATGCAGGAGCCTTATAGGGCCTACATGGACATGAAGAAGCTGATGACACCTACGCGGTACGACGAGGACCTGAATGAGACCTATGCGAGCCTGAGTGACATCTATGGCGGTGTTCCTGATCCCCTTTCAGTGTTCTACACCCTGGACCCACAGGGCGTCTTAGAGCGCCACACCTCGGACAACTGGAACGTGGACGACCGGATTAAGTTAGTCGGGAATCGCATGGGCACGACTTTCATCGTTGGTCATGAGTACGGCTTTCAATACGAGTTCTCAAAGTTCCTCATCAAGCAAACAGCAGATGACGGTACGACCAATACCGAGGACATCGGGCGTCTTCAGCTACGGCGAGCATGGGTGAACTACGACAATTCGGGCGCCTTTGAAATCAACGTGAACAATGGGTCCACACAGTTCGTGTACGTAATGGCAGGTGGGCGCCTGGGCACAGAAGCAACTCTTGGCGGGCTCACGTTGGGTACAGGGCAATTCAAGTTCCCAGTCACGGGCAACGCCAAGGCTCAAAGCGTAACCCTTTCGTCCTATGCACCAGTCCCTCTGAACATCATCGGATGCGGTTGGGAGGGTAACTACATGCGCCGGTCAAGTGGCGTGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
03a819106d054b840b8207fb3f262a1f08a3e90148ecc22e92fae45817e1ac5b
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2959
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A Pseudomonas lysogenic bacteriophage crossing the Antarctic and Arctic, representing a new genus of Autographiviridae Liu,Z. 2023 37108829 GenBank