Protein

View in Explore
Genbank accession
YP_012812021.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MDQEIKTVIQYPTGDTEYDIPFDYLSRKFVRVSLVSDDNRRQLSNITEYRYMSKTRVKLLVSTTGFDRVEVRRFTSATERVIDFSDGSVLRANDLNVSQLQSSHIAEEARDAALMAMPQDDAGNLDARNRRIVRLADGIEPTDAVNKNQLDETLGDAGGILSEVKEVQQEIGDYIEEFANGTTYLKNIVMVYNQGSAVGGETTIVINRPDPVFAVPTIYINGDRQDVGYQYEYNNVTKTITLVKPLHQGDFVVMMTSEGTHSLSSILAGPNGAAGIGTRDGLTVQEALDRIFASRIILPQWFGARGDWSDTTNTGTDDTAAFEAAIEMAVTLNYTEVYVPAGSYLITRELNLNGGNRNTRLGARIRGAGWASSVLVFKAPAPETPCISIIGTPGSHTSKGVEKLLIKAHPQTVGQGIGILCRNTCFAHVTEFIIANLNVGIRLENYMTAGSFTEFCYFTNGRLFTNNINIQFNKVQNGDNSFHGSNFKNVQNQVKKNGGIGVQIVGNPQGSAYLYNMTWDMQFFGGAGCIAMDLNYCNTDYVGGKLTGESDLTFKADGNSRFDFHGRFDSIGKVIWDTATEGARTGGTYVFANRTSLENAVMTNAGAGRLPAGVAARPLPADWADRNNNGVYPATFHIRGPNVESIGFATYNAAGNGFYFGHLPYQGNIKDFNPSFWFNSGGTSFRTAATAYTMILSNDAGLYFSDTTIRALSDGNVALGEYNRRFKEARFSSWDITAHIVPTSTASKDIGSNTNRVRDLYLVNAPNVTSDSRKKSFIKPIDDALLDAWETIPFSQWKLNDSVAQKGDAARWHVGYIAQKVEEALKAKGLNPDAYGLITYGEDGWMLRMEECLAVESAMIRRKLGLTYR
Physico‐chemical
properties
protein length:869 AA
molecular weight: 95506,81370 Da
isoelectric point:5,63999
aromaticity:0,10012
hydropathy:-0,29735

Domains

Domains [InterPro]
DC_0778
STR
1–829
DC_0778
IPR005604
ATT
2–127
IPR005604 IPR011050 IPR036388
IPR011049
STR
86–183
IPR011049 IPR012334 IPR030392
IPR011049
STR
126–153
IPR011049 cd10144
IPR030392
CHP
770–829
IPR030392
YP_012812021.1
1 869
Architecture
ATT
STR
RBD
CHP
ATT 1-127 | STR 128-829 | RBD 830-844 | CHP 845-869
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_012812021.1
1 869
Domain Start End Length (AA) Confidence
N-terminal 1 306 306 0,9961
Central domain 307 605 300 0,9797
C-terminal 606 869 263 0,9118
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-306
Central
307-605
C-terminal
606-869

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage Emom
[NCBI] 		3018529 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Przondovirus
Host Klebsiella oxytoca
[NCBI] 		571 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_012812021.1 [NCBI]
Genbank nucleotide accession
NC_111671.1 [NCBI]
CDS location
range 32990 -> 35599
strand +
CDS
ATGGACCAAGAAATTAAAACAGTCATCCAGTACCCTACGGGAGACACGGAGTATGACATTCCGTTCGACTACCTGTCCCGTAAGTTTGTTCGCGTGTCTCTGGTGTCAGATGACAACCGCAGACAGCTGAGTAACATCACTGAGTATCGCTACATGTCTAAGACCCGTGTGAAGCTCCTCGTGTCTACTACTGGTTTCGACCGTGTGGAAGTTCGACGCTTCACTTCGGCTACCGAGCGTGTTATCGACTTCAGTGACGGTTCAGTCCTTCGAGCCAATGACCTTAACGTGTCCCAGCTGCAATCCTCACATATCGCTGAGGAAGCTCGTGATGCTGCACTTATGGCTATGCCTCAGGACGACGCTGGGAACCTCGACGCTCGCAATCGCCGTATCGTACGGTTGGCTGATGGTATCGAACCAACTGATGCTGTCAACAAGAACCAACTGGACGAGACTCTGGGTGATGCTGGCGGTATCCTCTCAGAAGTCAAAGAGGTCCAGCAGGAGATTGGGGACTACATCGAAGAGTTCGCGAACGGTACAACTTACCTGAAGAACATTGTAATGGTGTACAACCAAGGGTCTGCCGTGGGTGGAGAAACCACCATCGTCATCAACCGACCTGACCCGGTGTTTGCCGTCCCGACCATATACATTAACGGTGACCGTCAGGATGTTGGATATCAGTACGAGTACAATAACGTGACCAAGACAATCACTCTGGTCAAGCCGTTACACCAAGGCGACTTCGTGGTCATGATGACCTCCGAAGGTACTCATTCACTGTCATCCATTCTGGCTGGTCCTAACGGTGCGGCTGGTATTGGTACACGCGATGGCCTGACCGTTCAGGAAGCTCTGGACCGCATCTTTGCGAGCCGTATTATCCTACCACAGTGGTTCGGTGCACGTGGCGACTGGAGCGATACGACAAATACTGGTACCGATGATACAGCAGCCTTCGAGGCGGCTATCGAGATGGCTGTCACCTTGAACTATACAGAGGTGTATGTCCCGGCTGGTTCCTACTTGATTACACGTGAGTTAAACCTCAACGGTGGAAATCGGAATACCCGCCTAGGTGCTCGCATCCGTGGAGCAGGTTGGGCCTCCTCAGTGCTGGTCTTTAAGGCACCAGCGCCAGAGACTCCATGTATCTCAATTATTGGTACTCCGGGGAGCCACACGTCCAAAGGTGTCGAGAAGTTACTCATCAAGGCTCACCCTCAGACAGTAGGCCAAGGTATCGGCATCCTATGTCGTAACACTTGCTTTGCTCACGTGACCGAGTTCATCATTGCGAACCTGAACGTAGGTATTCGTTTAGAGAACTATATGACCGCTGGGTCGTTCACCGAGTTCTGCTACTTCACGAACGGGCGACTGTTCACCAACAACATCAACATTCAGTTCAACAAGGTTCAGAATGGCGACAACTCGTTCCACGGGTCTAACTTCAAGAACGTACAGAACCAAGTTAAGAAGAATGGTGGTATTGGTGTGCAAATCGTAGGTAATCCACAAGGTTCGGCCTACCTGTACAACATGACGTGGGACATGCAGTTCTTTGGTGGTGCTGGTTGTATTGCCATGGACCTGAACTACTGTAACACCGACTACGTTGGTGGTAAGTTGACTGGGGAGTCAGACCTGACGTTCAAGGCCGATGGTAACTCTCGGTTCGACTTCCATGGGCGCTTCGACTCTATTGGCAAGGTCATCTGGGACACTGCGACAGAAGGTGCTCGTACTGGTGGTACGTACGTGTTTGCCAACCGTACATCCCTTGAGAACGCTGTGATGACCAACGCTGGCGCTGGTAGGCTTCCTGCTGGTGTGGCAGCTCGTCCACTCCCGGCTGACTGGGCTGACCGTAATAACAACGGTGTCTACCCCGCGACGTTCCACATCCGTGGGCCTAACGTTGAATCCATCGGGTTCGCAACGTATAACGCAGCTGGTAATGGGTTCTACTTCGGCCACCTACCGTACCAAGGTAACATCAAGGACTTCAACCCGTCCTTCTGGTTCAACTCCGGTGGTACTTCCTTCAGAACCGCAGCGACTGCCTACACGATGATCTTGAGTAACGACGCAGGCCTATACTTCTCTGACACGACCATTCGCGCTCTTAGTGACGGTAACGTGGCGCTGGGTGAGTATAACCGCCGATTCAAGGAAGCCCGCTTCTCCTCGTGGGACATTACAGCGCACATCGTGCCGACCTCGACTGCCTCTAAGGATATCGGGTCTAACACTAACCGTGTGCGCGATTTGTACCTCGTGAATGCTCCTAACGTTACCTCTGACTCCCGTAAGAAATCCTTCATCAAACCTATCGATGATGCCTTACTGGATGCGTGGGAGACAATCCCGTTCTCTCAGTGGAAGCTGAACGACTCGGTAGCCCAGAAGGGTGACGCTGCGCGTTGGCACGTTGGGTACATCGCTCAGAAGGTTGAGGAAGCGCTCAAGGCCAAGGGCCTAAACCCGGACGCTTATGGTCTCATCACTTACGGTGAGGACGGATGGATGCTCCGCATGGAAGAATGCCTCGCAGTAGAGTCTGCAATGATTCGCCGTAAACTCGGCTTAACCTATCGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
103335a446270237f64ee6cdcfcd006fe9c7e27103e79e5262b5f7654846be3c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7020
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A hybrid and poly-polish workflow for the complete and accurate assembly of phage genomes: a case study of ten przondoviruses Elek,C.K.A. and Adriaenssens,E.M. — — GenBank