Protein

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Genbank accession
QOE32159.1 [GenBank]
Protein name
tail knob protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKVDGSLKSLLQGVSQQPPRDRLPGQCTLQVNMSSDPITGLTRRPATDLVNKLLTSGNVRGWHDFDTKDGSKFLAAFYDTSVKVFDLNGVERTVVVDANAAPYLSTATEMRFSSIDNDTYVVNRQMTVLMTNEERVYFNKEDRQAFVIQVLGGQYGREYNIKINDVEYARFKVADGSQAVHIDQTRTKYIANQLFTKLANTDDGLPVLPTTWGRTIKDDIIVLWIDNTNDYTITVNDDYGNTNIKACGVTVARQEDLPRFAPHNYVIRVAEKTDAETDLWFRFIVEGHEDDWTSGMNLFGQQGYWQETVAPMTPIGINPATMPHVLTYLPNGTFRFRRVEWAKRSVGTTTSNPDPSFVNSPLTDVSSFQGRLVFTSGPNVIMSRTNKEQDFWFGSASAQAESDPIDVRSRVEASTMQAIIQHNRDLVIFSEKGQFIIYGRTSLTPENAALVLSSAFEAELRAKPVGAGRNVFFATNFGAYTGIREFFVESGTDINDSRAVTQHVKKFIEGRVTKIVASSNYDTALIQTDANLGKIYWYQYIWTDTEKVQSSWSELVFPLPIAHTWFDEETVYMVMRDGNDYYLTRMSLDVQDSAGVGYHVHLDHRFDAFEVSRQFVLPYAYLRNFDLTVVQGEGCPTPGMHVPILSTVYDPNYLGYVVTLKHDMTGGDVIVGGSYKSRYQPTMPMVKDQDQVKVGTGNLTISRFMIALSFTGEVIGQMVSDYGSGPPVRFNGRLVGDLKNRVGVQPLSNETFTLPFGQKADLAYIELWTDSHLPMTFLDVEWIGQYTKRGKRISTGGS
Physico‐chemical
properties
protein length:799 AA
molecular weight: 89718,92080 Da
isoelectric point:5,45605
aromaticity:0,11014
hydropathy:-0,30451

Domains

Domains [InterPro]
IPR058003
TTP
1–794
IPR058003
QOE32159.1
1 799
Architecture
TTP
TTP 1-794 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOE32159.1
1 799
Domain Start End Length (AA) Confidence
N-terminal 1 188 188 0,8905
Central domain 189 387 200 0,1388
C-terminal 388 799 411 0,2679
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-188
Central
189-387
C-terminal
388-799

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage Paso
[NCBI] 		2767574 Uroviricota > Caudoviricetes > Autographivirales > Pasovirus > Pasovirus paso
Host Bradyrhizobium japonicum
[NCBI] 		375 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOE32159.1 [NCBI]
Genbank nucleotide accession
MT708546 [NCBI]
CDS location
range 28254 -> 30653
strand +
CDS
ATGGCTAAGGTAGATGGTTCACTAAAATCCTTGCTACAAGGTGTGTCCCAACAGCCTCCGCGTGATCGGTTGCCGGGTCAGTGTACGTTGCAAGTCAACATGTCCTCTGATCCGATTACCGGGCTTACTCGTCGCCCTGCAACAGACTTGGTAAACAAGCTGCTGACCAGCGGTAACGTACGCGGTTGGCACGACTTCGACACCAAGGACGGGTCCAAGTTTCTGGCAGCGTTCTACGATACTAGTGTGAAAGTATTCGACCTCAACGGTGTCGAGCGCACAGTCGTCGTGGATGCAAACGCTGCCCCGTACCTTTCGACCGCAACGGAAATGCGGTTCAGTTCTATCGATAATGATACGTACGTTGTGAACAGACAGATGACTGTGCTCATGACGAACGAGGAACGCGTGTACTTCAACAAAGAGGACCGACAGGCATTCGTCATTCAGGTTCTGGGTGGTCAGTACGGCCGCGAATATAACATCAAGATCAACGATGTCGAGTACGCTCGCTTCAAGGTCGCTGATGGTTCGCAGGCTGTGCACATCGATCAGACACGTACGAAATACATCGCCAATCAGCTTTTTACTAAGCTGGCGAATACAGACGATGGTCTGCCTGTTCTGCCCACAACGTGGGGTCGTACGATCAAGGATGACATCATCGTCCTCTGGATCGACAACACGAATGATTACACGATCACCGTGAACGACGACTACGGTAACACGAACATCAAAGCATGTGGCGTCACGGTTGCGCGGCAGGAAGACCTTCCTCGCTTTGCACCGCATAACTACGTGATCCGTGTTGCCGAGAAGACCGACGCAGAAACCGACCTCTGGTTCCGCTTCATCGTGGAAGGACACGAGGACGATTGGACTAGCGGTATGAACCTGTTCGGGCAGCAGGGCTACTGGCAGGAGACTGTCGCGCCTATGACGCCGATTGGTATCAACCCGGCCACCATGCCCCACGTACTGACCTATCTCCCTAACGGCACCTTCCGGTTCCGGCGTGTGGAGTGGGCCAAGCGATCCGTGGGTACGACCACCAGTAACCCAGACCCATCCTTCGTGAACTCACCTCTAACAGATGTGTCGAGCTTCCAAGGACGACTGGTGTTTACATCCGGTCCAAACGTCATCATGTCGCGTACGAACAAGGAACAGGACTTCTGGTTCGGCTCCGCATCCGCACAGGCAGAAAGCGATCCCATCGACGTGCGCTCCCGCGTGGAAGCAAGTACGATGCAGGCTATCATCCAGCACAACCGAGACTTGGTTATCTTCTCGGAGAAGGGTCAGTTCATTATCTATGGGCGTACGTCACTCACACCTGAGAATGCCGCGCTGGTTCTGTCATCTGCTTTCGAGGCTGAGCTACGTGCTAAGCCAGTTGGCGCAGGCCGAAATGTATTCTTCGCAACGAACTTCGGTGCATACACGGGTATCCGCGAGTTCTTCGTTGAAAGCGGTACGGACATCAACGACAGCCGTGCAGTAACGCAGCACGTCAAGAAGTTCATCGAAGGGCGCGTGACCAAGATCGTCGCAAGCTCGAACTACGACACCGCACTGATCCAGACCGATGCCAACCTCGGTAAGATATACTGGTATCAATACATCTGGACAGACACCGAGAAGGTACAGTCCAGTTGGTCCGAGCTAGTGTTCCCGCTTCCCATTGCCCATACGTGGTTCGATGAGGAAACGGTGTACATGGTCATGCGCGATGGCAACGACTACTACCTGACCCGCATGTCTCTGGATGTGCAGGACAGCGCAGGCGTTGGATACCACGTCCATCTGGATCACCGCTTCGATGCGTTCGAGGTTAGCAGGCAGTTCGTTCTGCCGTATGCGTACCTGCGGAACTTCGACCTGACGGTTGTGCAAGGCGAGGGATGCCCGACACCGGGTATGCACGTCCCGATCCTTAGCACGGTATACGATCCAAATTACCTCGGCTACGTGGTGACTTTGAAGCACGACATGACTGGCGGTGACGTTATCGTGGGTGGTTCGTACAAGTCTCGCTACCAGCCAACCATGCCCATGGTGAAGGATCAGGATCAGGTCAAGGTGGGTACGGGCAACCTGACCATCAGCCGGTTCATGATCGCACTCTCCTTTACGGGCGAGGTCATTGGGCAGATGGTAAGCGACTACGGCAGTGGACCACCAGTCCGCTTCAATGGTCGTCTGGTTGGTGATCTAAAGAACCGTGTCGGTGTGCAGCCGCTCTCTAACGAGACGTTCACACTGCCATTCGGACAGAAAGCAGACCTTGCCTATATCGAGCTTTGGACAGACAGCCACCTACCGATGACCTTCTTGGATGTCGAGTGGATCGGGCAGTACACCAAGCGAGGTAAACGCATCAGCACCGGAGGCTCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4642d2ddde903c6e106d69fb8867a7aa76b106a1de7baf50e2c154601b70b017
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2833
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhizobium japonicum phage Paso McBee,D.B., Ravindran,A., Newkirk,H., Gonzalez,C., Young,R. and Liu,M. 2021-02-04 — GenBank