Protein

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Genbank accession
YP_009615429.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSDYGNVILKAFPGCLSDTSDYNIDGACVVGGQGEGIGGEHVFSGCAVWVESVDPGGHKIVRQSLISTQNVPYGIAMTHHYAPHESADGYAMYNVGDVINVVTHGRVWVYGNNTDITPTFGQRVRIQSNGTVGTSGGALVNWRFTGGKVIIKPNVAIFEVQLVQGINAFLVVQSGGMNINPNSIEVGATVQARLIAITPAAPDRTGKFSSEDEGVATVDQDTGLITGVAAGTTNIVWTANDSGKYTITRPITVTEAPPEP
Physico‐chemical
properties
protein length:260 AA
molecular weight: 27278,21520 Da
isoelectric point:4,99566
aromaticity:0,07308
hydropathy:-0,00308

Domains

Domains [InterPro]
IPR054438
STR
4–161
IPR054438 DC_1711
IPR003343
STR
173–249
IPR003343
G3DSA:2.60.40.1080
STR
177–256
G3DSA:2.60.40.1080
IPR003343
STR
177–246
IPR003343
IPR008964
RBD
181–253
IPR008964
YP_009615429.1
1 260
Architecture
STR
STR
STR 4-161 | STR 164-260
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009615429.1
1 260
Domain Start End Length (AA) Confidence
N-terminal 1 255 255 0,3466
Central domain 256 255 1 0,0183
C-terminal 256 260 4 0,9677
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-255
Central
256-255
C-terminal
256-260

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage SRT8
[NCBI] 		2496545 Uroviricota > Caudoviricetes > Drexlerviridae > Sertoctavirus > Sertoctavirus SRT8
Host Escherichia coli BL21
[NCBI] 		511693 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Escherichia > Escherichia coli

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009615429.1 [NCBI]
Genbank nucleotide accession
NC_042043 [NCBI]
CDS location
range 20715 -> 21497
strand -
CDS
ATGTCAGATTATGGAAACGTCATTCTAAAAGCTTTTCCCGGCTGTCTTTCCGACACGTCGGACTATAACATCGACGGCGCTTGTGTTGTGGGCGGGCAGGGTGAAGGCATCGGCGGCGAACACGTCTTTTCAGGTTGCGCCGTGTGGGTTGAGTCAGTAGATCCGGGCGGGCATAAAATCGTTCGTCAAAGCCTGATTTCTACTCAAAATGTGCCATACGGGATCGCAATGACGCATCACTATGCGCCGCATGAATCGGCGGACGGTTACGCGATGTATAACGTAGGCGATGTGATTAACGTCGTAACGCATGGTCGCGTGTGGGTTTACGGTAACAACACGGATATTACGCCAACTTTCGGACAGCGCGTTCGAATTCAGTCAAACGGCACTGTCGGCACTTCTGGCGGGGCGCTGGTTAACTGGCGATTCACTGGCGGTAAAGTGATTATCAAGCCTAACGTTGCAATCTTTGAGGTGCAATTAGTTCAGGGTATTAACGCGTTTTTGGTTGTGCAAAGTGGCGGAATGAACATTAACCCGAATTCGATCGAAGTGGGGGCAACCGTTCAGGCAAGGTTAATCGCTATCACTCCAGCCGCGCCGGATCGAACTGGTAAATTCTCTTCGGAAGACGAAGGCGTCGCGACGGTAGATCAGGATACGGGTTTAATCACTGGCGTAGCGGCTGGCACTACTAACATCGTATGGACGGCGAACGACTCCGGCAAGTACACGATCACGCGCCCGATTACCGTCACGGAAGCGCCGCCCGAACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6412b7100ac40a2fea9c92f1c9bf3e26914e9319a239fb9fd6c8a8f0cf671996
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8215
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence analysis of the novel Escherichia coli phage SRT8 Fan,X., Zhao,K., Song,S. and Zhao,Z. 2018-03-02 — GenBank