Protein

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Genbank accession
YP_009006426.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MAKPASINLSTVKRGDTYMVDFFFTDTDGTTDISAVTIDAQARREIDGALWFDLKPKVVDASKGHFRIHLTGDETRAITESPVNSFSGIYDIQFSWQGPSEIYVSTIIDGSISISKDVTQPVSLMNTGSNPGAPTPAADQTVNVYFSLDPGTPNYSDVVTAEELTPVQYQIAASMGLANVNVIDEVGEAVALTKKYRDEAAAIVTGGTATVDPEPGKIPLADEKGKIREGWLPDVAVFSSKSAVTAVQTLAHEQFAASGFINYGKNIVASLFPTINEGLNCRIDAPDMLLMGRVVTSQQGGSSKTAYPVVAVAGFVVKILGVNDRPSITGARVKFPKSPDGTVTYNKSTGESVTHADQSAAFLSADADPSVEVVTNRVDVYGFEFGKREINQSKPFLYLCGCNQSQATSIDGIDTVVGDNNPVFDGDTSVGKGVNLLNADTEQRIRLVNNPDNNVWVEGDTIYQFDVQQITIAGPGNGDWKNINPAKGDFLFDDNRPVLSKAGLPFVKSSEQGVFEDGKGNYFLVCGSVPRLNQGAFHPTYNPEGVSTFMAGGTWSKPYYAHNYINSTASCFKFNPSDSLEDGFIRTVGGKVWVGSIESGSSGHPSNKSYEVIYPSGQGGVVDCRRSAEDMGSREEASKIAIKYVNGSYRGEELYNSTTVSGEFTFTYTTDLSGLVTLPRECLDDTVECIVGSVRTTLQVTDGKVTLPDGAKTVTFTTRANVTKPSKNKPVLNAYDGVLGVFDATKKHTLLDFTIENGIISDYNAGSAPYSANLIYQISNSGQASLGIISDGKYLELSTSYGYTKNKARAGVQIPGVDL
Physico‐chemical
properties
protein length:819 AA
molecular weight: 87700,68010 Da
isoelectric point:4,84043
aromaticity:0,08913
hydropathy:-0,22869

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009006426.1
1 819
Domain Start End Length (AA) Confidence
N-terminal 1 261 261 0,9956
Central domain 262 596 336 0,9337
C-terminal 597 819 222 0,2146
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-261
Central
262-596
C-terminal
597-819

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage SHOU24
[NCBI] 		1414739 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009006426.1 [NCBI]
Genbank nucleotide accession
NC_023569 [NCBI]
CDS location
range 16170 -> 18629
strand +
CDS
ATGGCTAAACCTGCCAGTATTAACCTCTCAACAGTGAAGCGCGGCGACACCTATATGGTGGACTTCTTCTTTACCGATACCGACGGAACGACAGACATTTCTGCTGTCACTATCGACGCTCAGGCAAGAAGAGAGATTGACGGAGCTTTGTGGTTTGACCTAAAGCCTAAAGTCGTTGACGCGTCAAAGGGGCACTTTAGAATCCACCTTACCGGAGACGAGACCAGAGCAATAACAGAATCCCCTGTTAACTCGTTCTCAGGTATTTACGACATTCAGTTCAGTTGGCAAGGCCCATCTGAAATATACGTGTCTACCATTATCGACGGCTCTATTTCAATCTCTAAAGATGTCACTCAGCCAGTTTCGCTTATGAACACTGGGTCTAATCCTGGCGCGCCTACCCCTGCCGCGGATCAGACTGTAAACGTCTACTTCAGTCTCGATCCTGGCACGCCTAATTACAGTGACGTGGTAACTGCCGAAGAATTGACTCCAGTGCAGTATCAAATTGCAGCTTCGATGGGTTTAGCTAACGTCAATGTAATCGATGAAGTTGGCGAAGCGGTTGCGCTTACCAAAAAGTATCGAGATGAAGCAGCAGCTATCGTTACTGGCGGTACTGCAACCGTCGATCCGGAGCCAGGTAAGATCCCGTTAGCAGACGAAAAAGGTAAGATTCGCGAAGGGTGGCTTCCTGATGTAGCAGTATTTTCCTCGAAGTCTGCCGTTACCGCAGTGCAAACTCTAGCACATGAACAGTTTGCCGCTTCAGGGTTTATCAATTACGGCAAGAACATTGTAGCCAGCTTGTTCCCTACCATTAACGAGGGTTTGAATTGTCGTATCGACGCACCAGATATGCTGCTAATGGGTCGTGTCGTCACTAGTCAGCAAGGAGGTTCTTCAAAGACAGCTTACCCTGTCGTAGCCGTTGCAGGTTTCGTGGTTAAGATTTTAGGCGTTAACGATCGACCTTCTATTACAGGCGCGAGGGTTAAATTCCCAAAATCACCGGACGGTACGGTTACTTACAATAAGTCAACGGGAGAGTCAGTAACACACGCCGACCAATCAGCCGCTTTCTTATCGGCGGACGCTGACCCTAGTGTAGAGGTTGTTACCAATCGAGTTGATGTGTATGGGTTTGAGTTCGGCAAACGAGAAATAAACCAATCCAAACCGTTTCTGTACCTATGCGGGTGTAACCAATCACAAGCTACATCCATTGACGGTATAGATACCGTTGTAGGAGACAATAACCCGGTATTCGATGGTGACACTTCTGTAGGTAAAGGGGTTAATCTATTGAACGCAGACACCGAGCAAAGGATCCGATTAGTTAACAACCCCGACAACAATGTTTGGGTAGAAGGTGACACTATCTACCAGTTTGATGTTCAGCAAATAACTATTGCTGGCCCAGGTAACGGAGACTGGAAGAATATTAATCCTGCTAAAGGCGACTTTTTATTCGATGACAACAGACCTGTGCTGTCAAAAGCTGGGCTACCGTTCGTTAAGTCTTCCGAACAAGGTGTGTTTGAAGACGGTAAAGGTAACTACTTCCTAGTGTGCGGGTCAGTCCCTAGACTTAACCAAGGTGCTTTCCACCCAACATACAACCCTGAAGGTGTGTCTACATTCATGGCCGGAGGAACTTGGTCTAAACCGTACTACGCTCACAACTACATAAACTCTACTGCCAGTTGTTTTAAGTTCAACCCTTCCGATTCATTGGAAGACGGATTCATTCGAACTGTTGGAGGTAAAGTCTGGGTAGGTAGCATTGAGAGCGGATCATCTGGTCACCCTAGTAATAAATCGTATGAAGTTATTTACCCTTCTGGTCAAGGAGGGGTAGTTGACTGTCGTCGATCTGCCGAAGACATGGGAAGTAGAGAGGAGGCATCTAAGATAGCAATTAAATATGTCAATGGTTCCTACAGAGGAGAAGAACTTTACAACTCAACCACTGTTTCTGGCGAGTTTACATTTACATACACTACAGATCTGTCTGGACTAGTTACGCTGCCTAGAGAGTGTCTGGATGATACAGTAGAGTGTATCGTTGGGTCAGTACGTACAACCCTACAAGTGACTGACGGCAAGGTGACGCTACCTGACGGCGCTAAGACTGTAACGTTCACCACTAGAGCTAATGTCACAAAACCATCTAAAAATAAGCCAGTATTAAACGCATATGATGGGGTTTTAGGAGTGTTTGACGCTACAAAGAAACATACGTTGCTGGATTTTACCATAGAAAACGGAATCATATCTGACTACAACGCAGGGTCAGCTCCGTATAGTGCAAACCTCATCTATCAGATCAGTAATAGCGGGCAAGCCTCTCTAGGTATTATTTCTGATGGAAAATATTTAGAACTCTCTACCTCTTACGGTTACACAAAGAATAAAGCTCGTGCTGGAGTACAAATACCCGGAGTCGACCTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a0f19fd9fffadd7aa6f21701970af6a020dd101274604eea7e1bf067c3c4774d
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3700
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50