Protein

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Genbank accession
ARV77526.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSNFLPVSIPPGVVRGATPLDARGRWYDTNLVRWRHGVLEPVGGWEKRIITPLATRIRKLKTWRTNAEARFVLAASSSKIYVDYTGGSFDDVTPPDLATSDAGMELYGFGVNDYGEEAFGTARSVASTNLHLLPQYWTFGNWGEDMLGVSSADGRLLWYDASVPSNNFVAIGAAPTANAAVHVTPERHVMLLQAGGNARRIAWCSREDTNDWNFASTTNTAGFLDLDTQTPLLTAAQSRAGALIFSASDVSLMRYQGLPYIYGKEWLGQTRLLTPDTVVTDNGNVFWWAKDGFKMFDGGSIRTLDCPVWDYVKSRSTEVSLRMFAHGGALGVMPEIWWFYPSGGGTAIDSYVMTNYEEGWWAVGSLDRTAMVGADAEPFPLMTGEDGILYQHESGWTNGAPGIRDVWAESNALTLGAGDNFMEIKQALAANGRGYDAMTIRFFANRTPEGSEREFGPYSIRSNGWMDTRVSGRDVRVRLENTKNADWGIGELRLDVAPGAGR
Physico‐chemical
properties
protein length:502 AA
molecular weight: 55191,15330 Da
isoelectric point:5,12673
aromaticity:0,11554
hydropathy:-0,26833

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
ARV77526.1
1 502
Domain Start End Length (AA) Confidence
N-terminal 1 367 367 0,4881
Central domain 368 491 125 0,2256
C-terminal 492 502 10 0,9962
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-367
Central
368-491
C-terminal
492-502

Taxonomy

  Name Taxonomy ID Lineage
Phage Sinorhizobium phage phiM5
[NCBI] 		2005789 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Sinorhizobium meliloti
[NCBI] 		382 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARV77526.1 [NCBI]
Genbank nucleotide accession
MF074189 [NCBI]
CDS location
range 14146 -> 15654
strand +
CDS
ATGTCGAATTTCCTGCCTGTCAGCATTCCGCCGGGGGTTGTTCGGGGCGCAACGCCTCTGGACGCCCGTGGGCGCTGGTATGACACGAACCTTGTCAGGTGGCGGCACGGCGTGCTTGAACCTGTCGGCGGGTGGGAAAAGCGCATCATCACGCCGCTCGCCACGCGCATCAGGAAGCTCAAGACTTGGCGCACCAACGCCGAGGCGCGCTTCGTGCTCGCGGCTTCGAGCTCGAAAATCTACGTGGATTATACCGGCGGCTCGTTTGACGACGTGACGCCGCCTGACCTCGCGACCTCCGACGCTGGCATGGAGCTGTATGGTTTCGGTGTCAACGACTATGGCGAGGAAGCCTTTGGAACGGCGCGATCGGTAGCGTCCACCAACCTTCATTTGCTGCCCCAATACTGGACCTTTGGCAACTGGGGTGAAGACATGCTTGGGGTGTCATCGGCTGACGGCCGGTTGCTCTGGTATGACGCTTCTGTCCCCTCCAACAACTTCGTCGCCATCGGCGCAGCGCCGACGGCCAACGCGGCTGTTCACGTAACCCCCGAGCGGCATGTCATGCTGCTGCAGGCCGGCGGCAACGCGCGGCGCATTGCGTGGTGCTCGCGCGAAGACACGAACGATTGGAACTTCGCGTCGACCACGAACACCGCGGGTTTCCTCGATCTTGACACGCAGACGCCGCTCCTGACAGCCGCGCAGAGCCGCGCCGGTGCCCTGATCTTCTCGGCAAGCGACGTCAGCCTGATGCGCTATCAGGGGCTTCCCTATATCTACGGGAAGGAATGGCTCGGCCAGACCCGTCTCCTGACACCTGACACCGTTGTCACTGACAACGGCAACGTCTTTTGGTGGGCGAAGGACGGCTTCAAGATGTTTGACGGCGGCTCGATCCGCACGCTCGACTGCCCCGTTTGGGATTATGTCAAGTCGCGGTCAACCGAGGTCTCGCTGCGCATGTTCGCGCACGGCGGAGCCCTCGGCGTCATGCCGGAAATCTGGTGGTTCTACCCGTCAGGCGGCGGCACCGCGATCGACAGCTATGTCATGACCAACTACGAAGAAGGCTGGTGGGCCGTCGGCTCGCTTGACAGGACGGCGATGGTCGGTGCTGACGCTGAGCCATTCCCGCTGATGACCGGCGAAGACGGTATCCTCTACCAGCATGAGAGCGGCTGGACCAACGGCGCCCCCGGCATTCGCGATGTTTGGGCGGAGAGTAACGCCCTGACACTCGGCGCCGGTGACAACTTCATGGAAATCAAGCAGGCGCTCGCGGCCAACGGTCGCGGCTACGACGCGATGACCATTCGGTTCTTCGCCAACCGCACGCCGGAAGGCTCCGAGCGCGAATTCGGGCCTTACTCGATCCGGTCTAACGGCTGGATGGATACCCGTGTCAGCGGCCGCGACGTGCGCGTGAGGCTGGAAAACACGAAAAATGCCGATTGGGGTATAGGGGAACTTCGGCTGGACGTTGCGCCGGGAGCGGGGAGGTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
c51456e9c481dae56bd9462242dc02d684a56eba92c237b1c3427fa686519072
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8948
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Structure, proteome and genome of Sinorhizobium meliloti phage phiM5: a virus with LUZ24-like morphology and a highly mosaic genome Johnson,M.C., Sena-Velez,M., Washburn,B.K., Platt,G.N., Lu,S., Brewer,T.E., Lynn,J.S., Stroupe,M.E. and Jones,K.M. 2017-12 — GenBank