Protein

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Genbank accession
SBV38290.1 [GenBank]
Protein name
T1SS secreted agglutinin RTX
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,95
Protein sequence
MKYGSITLLGSATISNFAAENLATDPASPRVGQIWFNTTEEAYKFYDGTTIYPFAKGGDLDNYLLRDGSDAGMTGELVLNSNDQSAASGDRVAVSKGHLDTELATKQDTITGAATTITDSDLTASVALVSDASGKVGESATTAAEIGYVSGVTAPIQTQLDGKQADLGYVPVNKAGDSMTGNLILDGNLVKSLGAPVDANDAVRLVDLDNAISTLNWQDDVLATQIDATLDPGTPSEGDRYILTDVANLHANFGTITDVADGDIVEYVSSEFVVAFDVSDAALSPAGTLAYDIAGSTYMRYNGTAWAAFSGLDGLTAGNGLVKNGNVIDVNMGAGVASLPTDEVGIDLYATSGLFLTVDGSTPSVDTAAQLSLLLDGTTLSTSATGVKVAASGITEVEVAATALGNGLQGGDGTTLSVAAGTGVVVDGTGVNVDETYLDNRYINVDGDTMTGALVLASDPTAAMEATTKQYTDNAVATVQSAVDAAQTRIDNSYFVYDGTGSADASHTVTHNIGVQYVNVTVLDANDEVIMPDSITFDSTTQLTITLSQGLAIRAVCMGAAPQA
Physico‐chemical
properties
protein length:564 AA
molecular weight: 57669,71860 Da
isoelectric point:4,05003
aromaticity:0,05851
hydropathy:0,07340

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
SBV38290.1
1 564
Domain Start End Length (AA) Confidence
N-terminal 1 537 537 0,8834
Central domain 538 553 17 0,0080
C-terminal 554 564 10 0,9790
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-537
Central
538-553
C-terminal
554-564

Taxonomy

  Name Taxonomy ID Lineage
Phage Phage NCTB
[NCBI] 		1857647 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
SBV38290.1 [NCBI]
Genbank nucleotide accession
LT598654 [NCBI]
CDS location
range 86341 -> 88035
strand -
CDS
ATGAAATATGGTTCCATTACTCTACTCGGTTCAGCGACTATCTCAAACTTCGCTGCCGAGAATTTAGCGACCGACCCAGCCTCTCCACGAGTTGGTCAAATCTGGTTCAACACAACCGAAGAAGCGTACAAGTTTTACGACGGTACTACTATCTATCCATTTGCGAAAGGTGGTGACCTGGATAACTACCTGTTACGCGATGGTTCTGATGCGGGTATGACTGGTGAGTTGGTTCTTAACTCTAACGACCAATCTGCTGCTTCTGGCGACCGTGTTGCAGTTTCTAAAGGACACCTGGATACAGAACTTGCTACTAAGCAAGACACTATCACTGGTGCCGCGACTACTATTACTGACTCAGACCTCACTGCATCTGTTGCATTGGTTTCTGACGCAAGTGGTAAAGTTGGTGAATCTGCGACGACTGCTGCTGAAATCGGTTACGTATCTGGCGTGACTGCACCTATCCAAACTCAATTGGATGGTAAGCAGGCTGACCTGGGTTATGTACCAGTAAACAAAGCTGGTGACTCAATGACGGGTAACCTGATTCTTGACGGCAACCTGGTCAAGAGCTTAGGTGCTCCAGTTGACGCAAACGATGCTGTTCGTCTTGTTGACCTGGACAACGCTATCTCTACTCTGAACTGGCAGGACGATGTACTTGCTACTCAGATTGATGCGACTCTTGATCCAGGTACGCCTTCTGAAGGTGACCGCTACATCCTGACTGACGTTGCTAACCTTCATGCTAACTTCGGTACTATCACTGACGTTGCTGACGGTGACATTGTTGAGTACGTAAGTTCTGAATTCGTTGTTGCTTTCGACGTTTCTGATGCCGCTCTGTCTCCTGCTGGTACACTGGCGTATGACATTGCAGGTTCTACTTACATGCGTTACAACGGTACTGCATGGGCTGCGTTCTCAGGTCTGGACGGTCTGACTGCTGGTAACGGTCTTGTTAAGAATGGTAACGTAATCGACGTTAACATGGGTGCTGGTGTTGCATCACTGCCTACTGATGAAGTTGGTATCGACCTGTATGCTACCTCAGGTTTATTCCTGACTGTAGACGGTTCTACTCCTTCTGTTGACACTGCTGCACAGTTAAGCCTGTTGTTGGACGGCACTACGTTAAGCACTAGCGCGACTGGTGTTAAAGTTGCTGCTTCTGGTATCACCGAAGTAGAAGTTGCCGCTACTGCACTGGGTAACGGTCTGCAAGGTGGTGACGGAACTACGTTAAGCGTTGCTGCTGGTACTGGTGTTGTTGTAGACGGCACTGGTGTTAACGTTGACGAAACTTACCTGGACAACCGCTACATCAACGTAGACGGCGACACCATGACAGGTGCGCTGGTATTAGCTTCTGATCCTACTGCTGCGATGGAAGCGACTACCAAGCAATACACTGACAACGCTGTTGCTACTGTACAGTCTGCTGTAGATGCTGCGCAAACTCGTATCGACAATTCATACTTCGTGTATGATGGTACTGGTTCTGCTGATGCCTCTCACACAGTAACTCACAACATCGGCGTACAGTACGTTAACGTAACTGTCCTGGATGCAAACGATGAAGTTATCATGCCTGACTCTATCACTTTCGATAGCACCACGCAGTTAACTATCACCTTGTCTCAAGGTCTTGCTATCCGTGCAGTTTGTATGGGTGCTGCTCCTCAAGCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7289dbb531cad5b262fe6464126084da34511f270e3ba3babf1307cd8c4cdc97
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7092
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50