Protein

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Genbank accession
AYD80204.1 [GenBank]
Protein name
tail tubular protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,60
Protein sequence
MALISQSIKNLKGGISQQPDILRYPDQGSRQVNGWSSETEGLQKRPPMVFLKTLGGSGDLGQAPLIHLINRDEYERYYAVFTGSTIRVFDLAGNEKQVRFPSGAAYVQTANPRNDLRMVTVADYTFVVNRNVTVTESTEISTGGNFRDKGDALINVRGGQYGRTLKVLINGTVYASYTIPNGSAPEHVNNTDAQWLANELAKNLRNTLGPHGWTFNVGQGFIHVIAPANGEIVNISTEDGYADQLINPVTHYAQSFSKLPPNAPDGYMVKIVGDSSKSADQYYVQYDASRKVWKEVVGWNTKLHYTHATMPHALIRASDGNFEFQTISWNPRVCGDADTNPYPSFVGSTINDVFFFRNRLGFLSGENIILSRTAKYFNFFPASVANLSDDDPIDVAVSTNRIAILKYAVPFSEELLIWSDEAQFVLTASGTLTSKSVELNLTTQFDVQDRARPFGIGRNVYFASPRSSFTSIHRYYAVQDVSSVKNAEDITAHVPNYIPNGVFSICGSGTENFCSVLSHGDPSKIFMYKFLYLNEELRQQSWSHWDFGANVQVLACQSINSDMFIILRNEFNTFLARVSFTKNAIDLQGEPYRAFMDMKIRYTIPSGTYNDDTYETSIHIPTIYGANFGRGKITVLEPDGKITVFEQPTAGWNNDPWLRLSGNLEGRTVYIGFNINFVYEFSKFLIKQTADDGSTSTEDIGRLQLRRAWVNYEESGTFDIYVENQSSNWKYTMAGARLGSNTLRAGRLNLGTGQYRFPVVGNAKFNTVSILSDETTPLNIIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:796 AA
molecular weight: 88866,38700 Da
isoelectric point:6,06423
aromaticity:0,11935
hydropathy:-0,31206

Domains

Domains [InterPro]
IPR058003
TTP
1–796
IPR058003
AYD80204.1
1 796
Architecture
TTP
TTP 1-796
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYD80204.1
1 796
Domain Start End Length (AA) Confidence
N-terminal 1 138 138 0,9911
Central domain 139 349 212 0,3933
C-terminal 350 796 446 0,2159
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-138
Central
139-349
C-terminal
350-796

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage C5
[NCBI] 		2340717 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Teseptimavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYD80204.1 [NCBI]
Genbank nucleotide accession
MH717099 [NCBI]
CDS location
range 24127 -> 26517
strand +
CDS
ATGGCACTCATTAGCCAATCAATCAAGAACTTGAAGGGTGGTATCAGTCAACAGCCTGACATCCTTCGTTATCCCGACCAAGGGTCACGCCAAGTTAACGGTTGGTCTTCGGAGACCGAGGGCCTCCAAAAGCGTCCACCTATGGTTTTTCTCAAGACGCTGGGAGGAAGTGGTGACTTGGGACAAGCACCTTTAATTCACCTGATAAACCGTGATGAGTACGAGCGGTACTACGCAGTGTTTACCGGAAGTACCATCCGAGTTTTTGATTTAGCTGGTAACGAGAAACAAGTGCGTTTCCCTTCAGGGGCAGCGTATGTACAGACAGCTAACCCAAGGAATGACCTTAGGATGGTAACAGTTGCAGACTACACGTTTGTCGTTAACAGAAACGTCACAGTAACCGAGTCAACCGAAATTTCAACTGGTGGTAACTTTCGGGATAAAGGTGACGCTCTGATTAACGTGCGAGGTGGTCAATATGGAAGAACATTGAAGGTTCTGATTAATGGTACAGTATATGCATCATACACAATCCCCAACGGGTCCGCTCCAGAACACGTCAATAACACAGATGCTCAATGGCTTGCTAACGAGTTGGCTAAAAATCTTAGGAACACCCTAGGACCCCACGGGTGGACATTCAACGTTGGTCAAGGGTTCATTCATGTGATAGCTCCTGCCAACGGCGAGATAGTCAACATATCAACCGAGGATGGATACGCAGACCAGCTAATTAACCCCGTCACGCACTACGCTCAGTCGTTCTCTAAGTTGCCACCAAACGCTCCAGACGGCTACATGGTTAAGATTGTTGGAGATTCCTCAAAGTCCGCTGACCAGTATTACGTTCAGTATGATGCCAGTCGTAAGGTATGGAAGGAAGTTGTTGGGTGGAACACCAAGCTGCACTACACTCATGCTACGATGCCTCACGCTCTCATTAGGGCCTCTGATGGTAACTTTGAATTCCAGACCATCTCGTGGAACCCTAGGGTGTGCGGTGATGCTGATACTAACCCGTATCCTTCATTCGTAGGCTCTACGATTAATGATGTCTTCTTCTTCCGTAACCGTTTAGGATTCCTTAGCGGAGAGAATATCATATTGAGTCGTACTGCAAAATACTTCAACTTCTTCCCAGCGTCGGTTGCTAACCTAAGTGATGATGACCCTATCGACGTAGCTGTGAGTACCAACCGAATCGCAATCCTTAAGTACGCCGTTCCGTTCTCAGAAGAGTTACTCATCTGGTCCGACGAAGCACAGTTCGTTCTTACAGCGTCAGGCACCCTTACATCAAAGTCAGTTGAGTTGAACCTAACGACTCAGTTTGACGTACAGGACCGAGCGAGACCTTTTGGGATTGGACGAAATGTCTACTTTGCTAGTCCGAGGTCCAGCTTCACGTCCATCCACAGATACTATGCTGTGCAGGACGTAAGTTCCGTTAAGAACGCTGAGGACATTACAGCACACGTTCCTAACTACATTCCAAATGGTGTGTTTAGTATTTGTGGTAGTGGTACCGAAAACTTCTGTTCTGTACTATCTCACGGGGACCCTAGCAAAATCTTCATGTACAAATTCCTGTACCTTAACGAAGAGCTAAGGCAACAGTCGTGGTCTCACTGGGACTTTGGGGCAAACGTGCAGGTTTTGGCATGTCAGAGCATCAACTCAGATATGTTCATTATTCTACGTAACGAGTTCAATACGTTCCTTGCGAGAGTTTCCTTTACGAAGAACGCCATTGACTTACAGGGAGAACCATATCGGGCCTTTATGGATATGAAGATTCGCTACACGATTCCAAGCGGAACGTACAACGATGACACCTACGAAACTTCCATTCACATACCAACCATTTATGGTGCTAACTTCGGGAGGGGCAAAATCACTGTATTGGAGCCTGATGGTAAGATAACCGTATTTGAGCAACCAACTGCTGGGTGGAACAATGACCCATGGCTGAGGCTTAGTGGTAACTTAGAGGGACGAACGGTATACATTGGGTTCAATATTAACTTCGTCTATGAGTTCTCTAAGTTTCTCATCAAGCAGACTGCCGACGATGGGTCAACCTCAACGGAAGACATTGGTCGCTTGCAGTTACGCCGAGCGTGGGTTAACTATGAGGAGTCTGGTACGTTTGACATTTATGTTGAGAACCAATCATCCAACTGGAAGTATACGATGGCTGGTGCTCGCTTAGGCTCTAACACTCTGAGGGCTGGGAGATTGAACTTAGGGACAGGACAATACCGATTCCCTGTGGTTGGTAACGCCAAGTTCAATACCGTGTCTATCTTGTCTGACGAGACTACCCCGCTGAACATCATTGGGTGTGGCTGGGAAGGTAACTACTTACGGAGAAGTTCCGGTATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d008fce3fb2271b2f55bb5e7873f44541c150662c808088100d749603b633e43
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3366
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Distribution characteristics of Escherichia coli phages in piglets intestinal isolated from Jiangsu and Anhui province Lin,Y., Zhou,B., Luo,J., Hua,J. and Zhang,M. 2014-08-20 — GenBank