Protein

Genbank accession
AGH58024.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,63
TF
Evidence Phold
Probability 1,00
Protein sequence
MTIAEIVGRALPAARDRDLRQARVALVTEHGSALISREYWHCVRPNPGVRVVIRVVPAEGALKAVLSIVVTVAAVALGAVWGPALAGALGVSTAIGTALVIAGVSIVGNLLINALIPPVKPDNEKRNSYSINGLRNRLDPDGAVPFVLGKMRYAPPYAATPYTEIVGDDQYIRALFCFGEGELQITDMRLGETSLAEYDEVETEVRYGIAGELPCSLYPRQVVEEQIGVELTRPLPRDDNGDVISGQPTEDVPVVRTTGADASGATVIFAWPAGLVQFNDKGSKRTRAVSIRIEHRLAEADQWQLVDTLNITAKKAEGFYRQYSWDFPTRARWQVRVTMLTDESDSSNVQQRTTWVALQTLRPEYPLDYPRPLALVALRIKATHQLNGQLDNFNALVGRVCPDWDAASGTWVRRSTERPASLYREILQHASNPKAVADAGIDLDLLAEWHEHSEANSLTYNRVLEGTDTTLRDILTEVAAAGRATPRHDGQKWGVVIDRPSRDDLIVDHLNPRNSWGFKWSRSYTDAPDAFVVKFHDAGNDYKETQRIIPWPGHVGAVEITEELSLPGKVYADEVWREARRRQLETIYRPDTFEATQDGSARVVTRGDAIALSHYVLSRVQSAARVRNVSGRVIELDETVTMAAGTSYAIRFRVFDGPSDTIGRSVVREAITVAGESPLLTFVGDSNLPQVGDLVHFGPVASESYQQIVTGIEITEDMCSIVRTVDAAPEIDEELAATVVPAWSSRVGAELDENLLQPSAPRFVSIVSGVDGTDIADLIVYLIEPGSGAVPTSEFDIEHKSNGTATWTSSRLPIANGGGQITGYSNGNIVDIRARGVSATGIPGPYTPTITITVGGADASIPAALDSEAVNITPVLGGVTIEIATGDDPAIASLQLYRSQTEVLDRETDASGAPISAAPLRSFSASMGDTTRQILIGDGAMDGAGSWTLGAGWTIGSGSATHAPGSAGALSQPLTTESGKYYRVAVTVSGRTAGTITPKLTGGSDRSGVSITTDGIHSDRIQAVTGNDTFELVASADFDGSVEDVVVYLETAACLTQGDHHIWVEPQNSDGVPGPVSGPFTATVL
Physico‐chemical
properties
protein length:1085 AA
molecular weight: 116370,96770 Da
isoelectric point:4,88084
aromaticity:0,06544
hydropathy:-0,12323

Domains

Domains [InterPro]
IPR055385
249–362
IPR055385
NF040662
262–718
NF040662
AGH58024.1
1 1085
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhodobacter phage RC1
[NCBI] 		754055 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rhodobacter sp.
[NCBI] 		1062 Bacteria > Proteobacteria > Alphaproteobacteria > Rhodobacterales > Rhodobacteraceae > Rhodobacter

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH58024.1 [NCBI]
Genbank nucleotide accession
JF974308.1 [NCBI]
CDS location
range 2254 -> 5511
strand -
CDS
ATGACGATCGCCGAGATCGTCGGTCGGGCATTGCCGGCCGCGCGCGATCGAGATCTTCGCCAGGCACGCGTGGCGCTCGTGACAGAGCATGGATCCGCTCTGATCTCGCGCGAGTATTGGCATTGCGTCCGTCCGAACCCCGGCGTGCGAGTCGTCATTCGGGTGGTTCCGGCCGAAGGCGCCCTCAAGGCGGTCCTGTCGATCGTGGTCACGGTCGCGGCGGTTGCCCTGGGCGCCGTATGGGGGCCCGCCCTTGCAGGCGCCCTCGGAGTTTCGACCGCGATTGGAACCGCTCTGGTCATCGCCGGCGTCAGCATCGTCGGCAATCTCCTGATCAATGCGCTGATCCCGCCTGTGAAACCGGATAACGAGAAACGGAACAGCTATTCGATCAACGGTCTGCGCAACCGCCTCGATCCTGACGGGGCTGTCCCGTTCGTGCTCGGCAAGATGCGCTACGCGCCCCCTTACGCGGCAACGCCCTACACCGAGATCGTGGGCGATGATCAGTATATCCGGGCTCTGTTCTGCTTCGGAGAAGGAGAGCTTCAGATCACGGATATGCGCCTCGGCGAAACCAGTCTCGCGGAATACGACGAGGTCGAGACCGAGGTGCGCTACGGGATCGCGGGCGAGCTCCCCTGCAGCCTCTATCCCCGCCAGGTCGTCGAAGAGCAGATCGGCGTTGAACTCACGCGCCCCTTGCCGCGCGACGACAACGGCGACGTCATCAGCGGTCAGCCGACGGAAGATGTCCCGGTCGTGCGCACCACCGGGGCGGATGCATCCGGCGCGACCGTGATCTTCGCCTGGCCGGCTGGTCTCGTCCAGTTCAACGACAAGGGCAGCAAACGCACGAGAGCCGTCAGCATCCGGATCGAACATCGTCTGGCCGAGGCCGATCAGTGGCAACTCGTCGACACGCTCAATATCACCGCGAAGAAGGCTGAGGGCTTCTACCGACAGTATTCATGGGATTTTCCGACGCGCGCGCGCTGGCAAGTGCGCGTGACCATGCTGACCGACGAGTCCGACAGCAGCAACGTCCAGCAGAGAACGACCTGGGTGGCGTTGCAGACCTTGCGGCCGGAATACCCGCTCGATTACCCGCGTCCGCTTGCCCTGGTGGCGCTGCGCATCAAGGCGACCCATCAGCTCAACGGACAGCTCGACAACTTCAATGCCCTGGTCGGCCGCGTTTGCCCCGACTGGGATGCTGCGTCAGGAACCTGGGTGCGCAGAAGCACCGAGCGGCCCGCTAGCCTTTATCGCGAGATCCTCCAGCACGCATCGAACCCCAAAGCCGTCGCCGATGCCGGCATCGATCTCGACCTGCTCGCCGAGTGGCATGAGCACAGTGAGGCGAACTCCCTCACCTATAACCGCGTCCTCGAGGGAACCGACACCACTCTGCGCGACATCCTCACCGAGGTCGCGGCCGCTGGGCGGGCCACGCCGCGCCATGACGGCCAGAAATGGGGCGTCGTGATCGATCGTCCAAGCCGGGATGATCTGATCGTCGACCATCTCAACCCGCGCAACTCCTGGGGCTTCAAGTGGAGCCGAAGCTATACAGATGCGCCGGATGCCTTCGTCGTGAAGTTTCATGATGCGGGCAACGACTACAAGGAGACCCAGCGGATCATCCCCTGGCCGGGCCATGTCGGGGCGGTCGAGATCACCGAAGAGCTGAGCTTGCCCGGAAAGGTCTATGCGGACGAGGTCTGGCGTGAGGCACGCCGACGTCAGCTGGAGACGATCTATCGCCCCGACACGTTCGAGGCCACCCAGGACGGCTCGGCGCGTGTCGTCACCCGCGGAGATGCGATCGCGCTCAGCCATTACGTGCTTTCTCGGGTGCAGAGCGCCGCACGCGTGCGCAATGTTTCTGGACGGGTGATCGAGCTCGATGAAACGGTCACGATGGCGGCGGGAACCTCCTATGCGATCCGGTTTCGGGTGTTTGATGGGCCCTCCGATACGATCGGCCGATCGGTGGTGCGTGAAGCGATCACCGTTGCCGGAGAGAGCCCGCTGCTCACCTTCGTCGGCGACAGCAACCTGCCCCAGGTCGGCGATCTGGTTCATTTCGGGCCGGTCGCAAGCGAAAGCTACCAGCAGATCGTCACCGGAATCGAGATCACCGAAGACATGTGCTCGATCGTGCGCACCGTGGACGCGGCCCCTGAGATCGATGAGGAGCTCGCTGCAACGGTCGTGCCGGCATGGTCGAGCCGCGTTGGGGCGGAACTCGACGAGAACCTTCTGCAGCCCTCCGCGCCACGCTTCGTGTCGATCGTCTCCGGGGTCGATGGGACGGATATCGCGGATCTGATCGTCTATCTCATCGAGCCTGGGTCAGGCGCCGTTCCGACCTCGGAATTCGACATCGAACACAAGTCGAACGGAACCGCGACTTGGACTTCCTCGCGCCTGCCGATTGCCAATGGGGGCGGGCAAATCACGGGTTACTCGAACGGTAATATCGTCGACATCCGGGCTCGGGGCGTCAGCGCAACAGGCATTCCGGGCCCCTATACCCCCACGATCACGATCACGGTCGGCGGCGCGGATGCGAGCATTCCTGCGGCTCTCGATTCCGAAGCGGTCAATATCACGCCCGTCTTGGGCGGCGTCACGATCGAGATCGCCACCGGCGACGACCCGGCGATTGCCAGCCTCCAGCTCTACCGGTCGCAGACCGAGGTTCTCGACCGGGAGACGGATGCTTCCGGCGCGCCGATCTCTGCGGCCCCGCTGCGCAGCTTCTCCGCATCCATGGGGGACACGACGCGACAGATCCTCATCGGCGATGGCGCCATGGATGGGGCCGGCTCCTGGACGCTCGGCGCCGGTTGGACGATCGGCTCGGGCAGCGCAACGCATGCGCCGGGTTCGGCAGGCGCGCTTTCGCAGCCGCTGACGACCGAGTCCGGGAAGTACTACCGCGTCGCCGTCACCGTGTCCGGCCGGACAGCGGGGACGATCACGCCGAAGCTGACAGGCGGCTCGGATCGGTCCGGGGTTTCGATCACGACCGACGGGATCCATTCGGACCGCATTCAGGCCGTCACCGGCAACGACACGTTCGAGCTGGTCGCCTCGGCCGATTTCGACGGGTCGGTCGAAGATGTGGTCGTCTACCTCGAGACCGCGGCCTGCCTGACACAGGGCGACCATCATATCTGGGTCGAGCCTCAGAACTCCGACGGGGTTCCCGGCCCGGTTTCCGGCCCATTCACTGCAACCGTTTTGTGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
fa681091d3c828800da1599c054d84fa234ad588c5f152c071075de2b7b1c63a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8681
Evidence 0,8681
Download PDB

Literature

Title Authors Date PMID Source
The Genome Sequence of Rhodobacter phage RC1 Henn,M.R., Engelen,B., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank