Protein

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Genbank accession
QOC57850.1 [GenBank]
Protein name
putative tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,59
Protein sequence
MALISQTVKNLKGGISQQPNILRYPEQGEAQINAFSSETEGLQKRSPTVFTKIIAPAGAFGTKPLVHIINRDTVEQYQVVFTGTGVRVFGLDGKEYAVNGDMQYVQVSDPQKMLRCVTVADYTFIVNRTWTVQANGAVTDPGFRTDGDCIINVRGGQFGRTLRIHVNGGTQASLTLPDGSDAKQTPQTDAQYIVSQLAGQLRAAMGGWTINEGPGYIHIIAPGSDNIRSVTTEDGYANQLINAVTHEAQSFTKLPLEAPNGYKVKISSTNNGTSDKYYVQYDSLNKVWRETVGWGVQVGLDARTMPWALVRQADGSFQMTQLGYANRTCGDNDTNPMPSLVGQTINDVFFFRNRLGFLSGENIVMSRTAKYFNFFPPSVANLSDDDPIDVAVSHNRISILKYAVPFSEQLLLWSDQAQFVLSSSGVLTPKSIQLDLTTEFDVDDTARPYGVGRGVYFAAPRASFTSIKRYYAVQDVSAVKDAEDISAHVPSYIPNGVFSIHGSGTENFACVLTTGAPNKLFMYKYLFIEGELRQQSWSHWEFSEGTKIRAAQCIGSTMYLILENDQIFMARIHFTKNTVDFSDEPYRIYMDRKIRYVIPAGTYNDDTYQTTFNLSNVYGGLGFWKDKVSCVFLDGQVEEFTPPNGVSWEGNQPIIRLNGNREGEVVFLGANYEFYYEFSKFLIKKTAEDGSTATEDIGRLQLRRAWVNYEDSGAFLIQVENTSRLFEYMMAGGRLGSDSLRVGYLNVGTGQFRFPVVGNAQLNVVRLISDKTTPLNVIGCGWEGNYNRRSSGI
Physico‐chemical
properties
protein length:793 AA
molecular weight: 88067,92370 Da
isoelectric point:5,67358
aromaticity:0,11349
hydropathy:-0,26910

Domains

Domains [InterPro]
IPR058003
TTP
1–793
IPR058003
QOC57850.1
1 793
Architecture
TTP
TTP 1-793
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QOC57850.1
1 793
Domain Start End Length (AA) Confidence
N-terminal 1 140 140 0,9949
Central domain 141 343 204 0,1200
C-terminal 344 793 449 0,1434
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-140
Central
141-343
C-terminal
344-793

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEp_SNUABM_12
[NCBI] 		2772019 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Ningirsuvirus
Host Erwinia pyrifoliae
[NCBI] 		79967 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QOC57850.1 [NCBI]
Genbank nucleotide accession
MT822288 [NCBI]
CDS location
range 28550 -> 30931
strand +
CDS
GTGGCTCTTATTTCTCAAACAGTTAAAAACCTGAAAGGCGGTATTAGCCAACAGCCAAATATCTTACGATACCCTGAGCAGGGAGAGGCGCAAATCAATGCATTCTCCTCTGAGACTGAAGGTCTTCAGAAGCGGTCCCCGACAGTGTTCACTAAGATTATTGCGCCTGCTGGGGCCTTCGGGACTAAACCTCTCGTCCACATCATTAACCGTGACACCGTTGAGCAGTATCAGGTGGTATTCACCGGGACTGGTGTTCGTGTGTTTGGTCTGGATGGCAAAGAGTATGCAGTGAATGGTGATATGCAGTATGTCCAAGTGTCCGACCCTCAGAAGATGCTGCGCTGCGTTACCGTTGCTGATTACACTTTCATCGTTAACAGAACGTGGACCGTGCAGGCTAACGGAGCGGTGACCGACCCCGGCTTCAGGACTGATGGTGACTGTATCATCAACGTCCGTGGCGGTCAGTTTGGTCGTACCTTAAGGATTCACGTTAATGGTGGCACTCAGGCATCTCTGACGTTACCTGATGGTTCTGACGCCAAGCAAACCCCGCAGACGGACGCTCAGTACATCGTAAGTCAACTTGCTGGACAACTAAGGGCGGCGATGGGTGGCTGGACGATTAACGAAGGTCCGGGGTATATCCACATCATCGCACCGGGTAGTGATAACATCCGCTCGGTGACAACTGAGGATGGCTATGCGAACCAGCTGATTAACGCTGTGACCCATGAGGCACAGAGTTTCACCAAGTTACCTCTGGAGGCTCCTAATGGTTACAAGGTGAAAATCTCATCGACCAACAACGGGACCAGCGATAAGTATTACGTCCAGTACGACTCACTCAATAAGGTCTGGCGTGAGACTGTAGGCTGGGGCGTTCAGGTCGGTCTTGATGCTCGGACTATGCCTTGGGCCTTAGTACGTCAGGCAGATGGTTCATTCCAGATGACTCAGTTGGGATACGCTAACCGCACCTGTGGTGACAACGATACCAACCCAATGCCGTCCCTTGTGGGCCAGACGATTAACGATGTGTTCTTCTTCAGGAACCGTTTAGGATTCCTCAGTGGAGAGAACATTGTGATGAGTCGTACTGCTAAATACTTCAACTTCTTCCCACCTTCAGTGGCGAACCTGAGTGATGATGACCCGATTGATGTGGCTGTTTCGCACAACCGAATCTCCATCCTGAAGTATGCCGTGCCATTCTCTGAGCAGTTACTCCTGTGGTCTGACCAAGCGCAGTTCGTCCTGTCATCTTCAGGTGTCCTGACTCCGAAGTCTATCCAGCTGGACCTCACCACTGAGTTCGATGTGGATGACACAGCGCGGCCTTACGGTGTCGGTCGAGGTGTTTACTTCGCGGCCCCTCGTGCCTCCTTCACGTCCATCAAGCGTTACTATGCGGTACAGGATGTGAGTGCTGTTAAGGATGCTGAGGATATCTCTGCTCACGTTCCAAGCTACATCCCTAACGGGGTGTTCAGTATTCATGGTTCAGGTACAGAGAACTTTGCGTGTGTTCTCACCACTGGTGCGCCTAATAAGTTGTTCATGTATAAATACCTGTTCATCGAAGGTGAGCTGAGACAACAGTCATGGTCACATTGGGAGTTCTCTGAGGGAACCAAGATTCGAGCGGCTCAGTGTATCGGCTCCACGATGTACCTGATTCTGGAGAACGACCAGATTTTCATGGCTCGTATCCACTTCACGAAGAACACTGTGGACTTCTCGGATGAGCCTTATCGTATCTACATGGACCGCAAGATTCGCTACGTGATTCCAGCTGGGACCTACAACGATGACACCTACCAGACGACCTTCAACCTCTCCAACGTGTACGGTGGGTTAGGATTCTGGAAGGACAAAGTGTCCTGCGTGTTCCTTGATGGTCAGGTGGAGGAGTTCACGCCACCGAATGGTGTATCGTGGGAAGGTAACCAACCGATTATCCGACTCAACGGTAACCGTGAGGGCGAGGTGGTGTTCCTCGGTGCGAACTATGAGTTCTACTACGAGTTCTCTAAGTTCCTCATCAAGAAGACTGCGGAGGATGGCTCAACAGCCACTGAGGATATCGGTCGGTTGCAGCTTCGTCGTGCGTGGGTCAACTATGAGGACTCTGGTGCGTTCCTTATCCAAGTGGAGAATACCTCTCGACTCTTTGAGTATATGATGGCTGGTGGTCGCTTAGGCTCCGACAGTCTTCGTGTGGGTTACCTCAACGTTGGCACAGGACAGTTCCGATTCCCGGTAGTGGGCAATGCTCAGTTGAACGTAGTGCGCCTTATCTCTGACAAAACGACTCCACTCAACGTGATTGGTTGTGGCTGGGAGGGTAACTACAATCGCCGCTCAAGCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d3d5b9490142e54ba4404dcf13e922bef64664ef94bbea8497e96dc29a955e79
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3030
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of novel Erwinia phage pEp_SNUABM_12 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank