Protein

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Genbank accession
YP_009205853.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
Protein sequence
MSTNTLKHISDKSEFKSFDPTGSNFPPDITNVQEALATISLIGVTGNVPSATETSQGIIRLATTQEVMDGLDAYSAVTPATLKARLDIPTQATETYVGITRYATNAEAIAGTEPQAAIVATSLKAVMDYTFENRLSTENATGVIKISTTPAALAGTDDTTAMSPLKVSQAIGAATAALPVYSTATTTNEGLVRLATNGEVGNGNLSVGIAISPAGLATLTSTESRSGIIKLAGWDLVSNGTDHTAAVTPASLLARTGNTGRIGLVRLTTTVGQGDGNTALAYNANVISTSGGDIWGTLNVNGALRRNGVDVVTHDQLSDSVPVGTICMWGGNEGNIPGKWRACVGGTYTGGAYLNAVGGRWGWWGAIPDFRGLYPRGANMVGGYSEGEVNPHIAGNRGEDGKGKARLGNGVGSFPQSSVQAQALRYHKHAGGFGEHDNAGAFGNTANQGYAGTRKGLDWDNRSYYTNEGFETVDAWQRDGYTTLNSEGLIANETRPWTMSVLFIIKVE
Physico‐chemical
properties
protein length:508 AA
molecular weight: 52920,08550 Da
isoelectric point:5,39012
aromaticity:0,06890
hydropathy:-0,19941

Domains

Domains [InterPro]
DC_0176
STR
1–423
DC_0176
SSF69349
STR
248–333
SSF69349 IPR044916
G3DSA:2.10.280.10
Unmapped
248–285
G3DSA:2.10.280.10 IPR037053 IPR027448
IPR015173
STR
251–309
IPR015173 SSF88874
YP_009205853.1
1 508
Architecture
STR
ATT
STR
STR 1-309 | ATT 310-371 | STR 372-507 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vb_EcoM-VR5
[NCBI] 		1567026 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Dhakavirus
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009205853.1 [NCBI]
Genbank nucleotide accession
NC_028881 [NCBI]
CDS location
range 86368 -> 87894
strand +
CDS
ATGTCAACAAACACACTAAAACACATTAGTGATAAATCGGAATTCAAATCATTCGACCCTACTGGGTCGAATTTCCCGCCTGATATTACTAATGTTCAAGAAGCATTGGCAACTATTTCATTAATCGGCGTCACAGGTAATGTCCCTTCAGCCACAGAAACATCCCAAGGTATTATTCGTCTTGCCACAACACAAGAAGTAATGGATGGGTTGGATGCTTATAGTGCAGTGACTCCGGCAACTTTAAAAGCACGTTTAGATATTCCTACTCAGGCAACAGAAACTTATGTAGGTATCACCCGTTATGCTACTAACGCTGAAGCTATAGCAGGCACAGAGCCCCAGGCTGCAATCGTAGCAACCTCTTTGAAAGCGGTAATGGATTATACATTTGAGAACCGGTTATCAACAGAGAATGCTACAGGCGTTATCAAGATTTCAACTACACCTGCCGCATTAGCTGGTACAGATGATACCACAGCAATGTCCCCACTTAAAGTATCTCAAGCAATTGGTGCGGCCACAGCAGCGTTACCGGTTTATTCTACGGCAACGACCACAAATGAAGGTTTAGTTCGTTTAGCAACAAACGGTGAAGTAGGTAATGGAAATCTTTCTGTCGGTATTGCTATTTCTCCTGCTGGCTTGGCCACATTAACTTCTACCGAATCACGAAGTGGGATTATTAAACTTGCCGGTTGGGATTTAGTGTCAAATGGTACTGACCATACTGCCGCTGTTACTCCGGCATCTTTGCTAGCTCGTACAGGTAATACAGGACGAATTGGGTTGGTGCGTTTAACTACTACAGTAGGTCAAGGTGACGGTAATACTGCCTTAGCTTATAACGCTAACGTTATTTCTACTTCAGGTGGTGATATTTGGGGAACATTAAACGTTAACGGAGCCTTACGTCGTAATGGTGTTGATGTTGTTACACATGACCAATTATCAGATAGTGTTCCTGTTGGTACTATTTGTATGTGGGGTGGAAATGAAGGTAATATCCCAGGTAAATGGCGAGCTTGTGTAGGTGGGACTTATACTGGTGGTGCATATTTAAATGCTGTTGGTGGGCGTTGGGGATGGTGGGGTGCTATTCCGGATTTCCGTGGATTATATCCTCGCGGCGCTAACATGGTTGGTGGATATTCTGAAGGTGAAGTAAACCCACATATTGCAGGCAATCGTGGTGAAGACGGTAAAGGCAAAGCCCGTTTAGGTAACGGTGTAGGTTCGTTCCCACAATCTTCAGTCCAGGCACAAGCATTAAGATATCATAAACACGCAGGTGGATTTGGCGAACACGATAACGCAGGCGCTTTTGGTAATACTGCAAACCAAGGTTATGCAGGTACTCGTAAAGGCCTTGATTGGGACAACCGCAGTTATTATACCAACGAAGGTTTTGAGACAGTTGATGCATGGCAACGTGACGGTTATACCACACTGAACAGTGAAGGTCTTATTGCCAATGAAACACGTCCATGGACAATGTCCGTTCTTTTTATTATTAAAGTAGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
50e52ba3392a0c5d56e3e7af55c27f25120c03b85da79823f246642028f7c3af
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6693
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
VR bacteriophages - a small but diverse group of low-temperature viruses Kaliniene,L., Meskys,R., Simoliunas,E., Zajanckauskaite,A. and Truncaite,L. 2015-03-10 — GenBank