Protein

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Genbank accession

ARB11505.1 [GenBank]

Protein name

structural protein

RBP type

Evidence RBPdetect

Probability 0,88

Protein sequence

MAKPKDPIYVWAAADVNLPGTGRPNKSKPIDDLLAKGYDKGQKPAAEEFNYILNMSSAWVNWIVNEKFPELEAEIARLLAELENRINQQLAVIRQDIAQLRQDVADLRRYVDQKVQELKQEIQGVRNDLNKLRQDFDAAITQVNGRIDDLEPRLVPIGAVIPWPGATVPDGWLECSGQVFNTGQNPKLYSVLGRNVVPDYRGLFLRGWAHGSDANDPDAGRALGSVQGDAIRNITGYFPADIGNSNFIGRYVGGAFRDDGSLTSGDDGTRSNEVRKYSFDASREVPVAAENRPKNIAVMYIIKTDQAQSSGGNSPTAIVVSPDTITNRIGYAVKATASVLPASISGQYPISWSTQNAAVATVDGSGNISLVGPGETNIIASISTGMNVVIRVTSYSVLTSISIADPGQIPVTESKMLVVTKSPSSANEPLQFLSNNSGVAAVNDAGHVIGVSAGSATITVRGTLSGVSSTRAVTIIPEQVEESVQDNRLGAVGSYIPPSPSSHIMSWTFQAPQGCALTGIIVQENESNSGDNIGGVYYKPIQKKVNGVWVTITG

Physico‐chemical properties

protein length:	554 AA
molecular weight:	59193,69080 Da
isoelectric point:	5,21904
aromaticity:	0,06498
hydropathy:	-0,20921

Domains

Domains [InterPro]

DC_0413
STR
1–530

DC_0413

SSF58113
STR
41–156

SSF58113 IPR011083 G3DSA:2.60.40.1080 G3DSA:2.60.40.1080

Coil
Unmapped
68–142

Coil IPR051934 IPR008964 IPR003343

G3DSA:1.20.58.130
Unmapped
87–154

G3DSA:1.20.58.130 SSF88874 IPR008964

IPR037053
ATT
155–206

IPR037053

ARB11505.1

1 554

Architecture

STR

ATT

STR

STR 1-154 | ATT 155-206 | STR 207-530 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0413	STR	DC_0413	1	530	Novel HMM	DC_0413	Central	Low	Positional only	85 proteins / 85 hits
SSF58113	STR	SSF58113	41	156	Merged direct domain	SSF58113	Central	Low	Positional only	3 proteins / 3 hits
Coil	Unmapped	-	68	142	Coils	Coil	-	-	-	-
G3DSA:1.20.58.130	Unmapped	-	87	154	Gene3D	None	-	-	-	-
IPR051934	Unmapped	-	150	239	InterPro	Bacteriophage Tail Fiber Structural Protein	-	-	-	-
SSF88874	STR	SSF88874	154	303	Merged direct domain	SSF88874	Central	Low	Positional only	109 proteins / 109 hits
IPR037053	ATT	IPR037053	155	206	Merged direct domain	Phage tail collar domain superfamily	N-terminal	Low	Positional only	37 proteins / 37 hits
IPR011083	ATT	DC_0235	158	204	InterPro cluster	Phage tail collar domain	C-terminal	Medium	Text match	1051 proteins / 1051 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	314	393	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR008964	RBD	IPR008964	316	392	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits
G3DSA:2.60.40.1080	STR	G3DSA:2.60.40.1080	394	476	Merged direct domain	G3DSA:2.60.40.1080	Central	Low	Positional only	18 proteins / 18 hits
IPR003343	STR	DC_0008	409	460	InterPro cluster	Bacterial Ig-like domain, group 2	C-terminal	Medium	Text match	304 proteins / 473 hits
IPR008964	RBD	IPR008964	414	461	Merged direct domain	Invasin/intimin cell-adhesion fragments	C-terminal	Low	Positional only	2 proteins / 2 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Pectobacterium phage vB_PatM_CB7 [NCBI]	1958916	Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host	Pectobacterium atrosepticum [NCBI]	29471	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

ARB11505.1 [NCBI]

Genbank nucleotide accession

KY514263 [NCBI]

CDS location

range 27029 -> 28693
strand +

CDS

ATGGCTAAACCAAAGGACCCTATTTACGTTTGGGCCGCTGCTGACGTAAACCTTCCAGGCACGGGTCGTCCTAACAAATCAAAGCCTATTGACGACTTGCTCGCCAAAGGTTATGATAAAGGGCAAAAGCCAGCGGCAGAAGAGTTCAACTATATCCTGAATATGTCCTCTGCTTGGGTTAACTGGATCGTCAATGAGAAGTTCCCAGAGCTTGAGGCAGAAATCGCCCGGCTCTTGGCAGAACTTGAAAACCGCATCAACCAGCAGTTGGCTGTTATCCGACAGGATATTGCTCAACTGAGGCAAGATGTAGCAGATCTTCGTCGATATGTCGACCAGAAGGTTCAGGAACTGAAGCAGGAGATCCAAGGCGTCCGAAACGACCTGAACAAACTGCGTCAAGACTTTGATGCTGCGATTACTCAAGTAAACGGACGAATTGATGACCTTGAACCACGCCTTGTCCCAATCGGTGCCGTTATCCCTTGGCCTGGGGCGACAGTCCCTGACGGCTGGCTGGAGTGTAGTGGTCAGGTGTTTAATACCGGGCAGAACCCCAAACTGTATAGCGTTCTGGGCCGAAACGTTGTCCCTGACTACCGTGGTCTGTTCCTGCGTGGCTGGGCACATGGTTCTGATGCTAACGATCCTGACGCTGGACGTGCTCTCGGCTCTGTGCAGGGAGACGCCATCCGAAACATCACGGGTTACTTCCCTGCGGATATCGGTAATTCCAACTTCATCGGCCGTTACGTCGGCGGTGCTTTCCGTGACGATGGCAGCCTGACCTCTGGTGACGATGGCACCCGTTCCAACGAAGTACGTAAGTATAGCTTCGACGCTTCCCGTGAAGTCCCGGTAGCCGCCGAAAACCGTCCGAAGAACATCGCGGTGATGTACATCATCAAGACCGACCAGGCGCAGTCCTCCGGAGGTAACTCACCAACGGCGATCGTCGTCTCCCCAGATACAATCACCAACCGTATAGGATACGCCGTCAAAGCGACTGCAAGTGTACTCCCTGCTTCCATCTCAGGTCAATACCCGATATCATGGTCTACTCAAAACGCTGCGGTGGCAACCGTGGATGGCTCTGGCAACATCAGCCTTGTAGGACCGGGTGAAACCAACATCATCGCTTCCATCTCTACCGGGATGAACGTGGTGATCCGTGTGACGAGCTACTCTGTTCTGACCAGCATCTCCATTGCTGATCCGGGTCAGATTCCAGTCACCGAATCGAAGATGCTTGTTGTTACTAAAAGCCCAAGTAGTGCGAACGAGCCTCTGCAATTCCTGTCAAATAACTCCGGTGTTGCGGCTGTGAACGACGCAGGTCACGTAATTGGTGTCAGTGCTGGTTCTGCAACCATCACGGTACGAGGAACGTTGTCTGGAGTCTCCAGCACTCGTGCAGTAACGATTATCCCTGAGCAGGTTGAAGAGAGCGTACAGGATAACCGTCTCGGCGCGGTTGGTTCTTACATCCCACCAAGCCCCTCAAGCCACATAATGAGTTGGACTTTCCAAGCCCCTCAAGGTTGTGCTCTGACAGGTATCATCGTACAAGAGAACGAATCAAATTCCGGGGACAACATCGGTGGTGTTTATTACAAGCCGATCCAGAAGAAAGTTAACGGCGTCTGGGTCACGATCACGGGGTAA

Genome Context

Tertiary structure

PDB ID

8794328ce6c006ade283314fe96e013d77ff470c3fc02c024ec86c40add8d6cd

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8226

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence