Protein

View in Explore
Genbank accession
XRM23834.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
TSP
Evidence RBPdetect2
Probability 0,93
Protein sequence
MRGGATVSNAFMTSAKAVKGLTITGNTFHGIDQEIVRLAHSGETSQDITIANNTYQSCFSTGAGIFNITSGAIDGITVKESGVVAPTPTWIPVRRSSGLSVANHKIDVNCSVSPYVHNFSRGNSLGSSRKQGVYNGTGNTATQTIVVGYESRNIRVTGSDGTVCILPYGTNTLANGLAIGTAQDFTATGNANKSGVIYFWESE
Physico‐chemical
properties
protein length:203 AA
molecular weight: 21190,28700 Da
isoelectric point:8,47793
aromaticity:0,07389
hydropathy:-0,11182

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRM23834.1
1 203
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0029
Central domain 11 192 183 0,5875
C-terminal 193 203 10 0,9957
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-192
C-terminal
193-203

Taxonomy

  Name Taxonomy ID Lineage
Phage Acinetobacter phage vB_AbaA_EAB11
[NCBI] 		3404147 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Acinetobacter baumannii
[NCBI] 		470 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Moraxellales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM23834.1 [NCBI]
Genbank nucleotide accession
PV208534.1 [NCBI]
CDS location
range 29773 -> 30384
strand +
CDS
ATGCGCGGTGGTGCGACAGTTTCAAATGCGTTTATGACCTCTGCTAAAGCAGTTAAAGGCTTAACTATTACTGGAAATACTTTTCACGGTATTGATCAGGAGATTGTTAGACTGGCGCATTCTGGTGAAACAAGCCAAGACATAACCATAGCTAACAATACATACCAATCATGCTTTTCAACAGGTGCTGGAATATTCAACATAACAAGCGGGGCTATTGATGGAATAACGGTTAAAGAGTCTGGAGTTGTAGCGCCAACACCAACGTGGATTCCAGTCAGACGTTCGTCTGGCTTGAGTGTAGCAAACCATAAAATTGATGTGAATTGTTCAGTATCTCCTTACGTACACAATTTTTCTCGCGGGAACTCTCTTGGGTCGTCAAGAAAGCAGGGTGTTTACAACGGCACTGGCAATACTGCAACACAAACAATAGTAGTTGGCTATGAGTCACGTAATATTAGAGTAACTGGTTCTGATGGCACAGTTTGTATTTTGCCGTATGGCACAAATACTCTTGCTAACGGATTAGCAATTGGCACAGCACAAGACTTCACTGCTACAGGAAATGCAAACAAATCTGGTGTAATATACTTTTGGGAATCAGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
614462d13697060f6c18ce6144020e2e23a162bf48316b267490e3bfeeb46175
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6244
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic characterization of phages infecting pan drug resistant Acinetobacter baumannii causing pneumonia disease Hatem,E.A., El-Sabbagh,S.M., El-Didamony,G., Youssef,C.R.B., Sobhy,N.M., Askora,A. and Tartor,Y.H. 2024-12-03 — GenBank