Protein

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Genbank accession
YP_007236260.1 [GenBank]
Protein name
structural protein with Ig domain
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect
Probability 0,85
Protein sequence
MPTITVLVAPEVVRNKPETERLHTVTGTAKGWEKTSLNQDPDEILTECKGLDALLTKSNLQADGVTKVDPTKPIGFEISYEIHDPSAVLTTGLTITPATAGGEVGQVVDLLATVAPANATYQGVNWYSGDITKAVHIGGGKFKLLAPGSVTVYGVTIEGSHTDSTVITVAGALALSTDLAASQDVTAGEDATFTIAATGGTTPYTYAWYFSDVPGGEGVVIDAGANATAATASLVITAVDAADEGEYWCVVEDADGHSVTSTRCEMAVV
Physico‐chemical
properties
protein length:269 AA
molecular weight: 27691,55000 Da
isoelectric point:4,29438
aromaticity:0,05948
hydropathy:0,10967

Domains

Domains [InterPro]
DC_0400
STR
2–269
DC_0400
G3DSA:2.60.40.1080
STR
86–170
G3DSA:2.60.40.1080 IPR013783
IPR003343
STR
91–160
IPR003343 IPR007110
IPR003599
STR
180–269
IPR003599
IPR036179
RBD
181–262
IPR036179
PF13927
STR
183–252
PF13927
cd00096
STR
191–262
cd00096
YP_007236260.1
1 269
Architecture
STR
STR 2-269
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SKML-39
[NCBI] 		1204528 Uroviricota > Caudoviricetes > Pantevenvirales > Aglimvirinae > Agtrevirus
Host Salmonella
[NCBI] 		590 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_007236260.1 [NCBI]
Genbank nucleotide accession
NC_019910 [NCBI]
CDS location
range 120888 -> 121697
strand -
CDS
ATGCCAACAATCACTGTATTAGTAGCACCGGAAGTTGTTCGCAACAAACCGGAAACCGAGCGTCTGCACACCGTGACAGGCACTGCCAAGGGTTGGGAAAAGACCAGTCTTAACCAAGACCCTGACGAGATCCTGACCGAGTGTAAAGGCCTGGATGCACTTCTGACCAAGAGCAATCTTCAGGCTGATGGCGTGACTAAGGTTGATCCAACCAAGCCTATCGGCTTCGAGATCTCTTACGAAATCCACGACCCAAGCGCCGTGCTGACCACTGGCCTGACCATCACCCCTGCGACTGCTGGTGGTGAAGTCGGTCAGGTTGTTGACCTGCTGGCGACCGTCGCTCCGGCGAACGCAACCTACCAGGGTGTCAACTGGTACTCTGGTGACATCACCAAAGCTGTACACATCGGCGGTGGTAAATTCAAGCTGCTGGCTCCTGGTTCTGTGACTGTGTACGGTGTTACCATCGAAGGCAGCCACACTGATTCTACAGTCATCACAGTGGCGGGTGCGCTGGCTCTGTCTACTGATCTGGCTGCTTCTCAGGATGTAACAGCAGGTGAAGACGCAACCTTCACCATCGCTGCTACAGGCGGCACTACCCCATACACATATGCTTGGTACTTCTCTGATGTCCCTGGCGGTGAAGGTGTGGTGATCGATGCTGGCGCCAACGCCACTGCTGCAACTGCGAGCCTGGTTATCACTGCAGTTGATGCCGCAGACGAGGGTGAGTACTGGTGTGTTGTTGAAGACGCCGACGGCCACTCTGTGACCTCCACCCGTTGTGAAATGGCTGTGGTCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e89d994700c96a746325a0289db7e28ab3f0040c85855e1dd761edb0808be491
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7260
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophages quickly and effectively reduce contamination of various foods with Salmonella Woolston,J., Parks,A.R., Hanna,L.F., Charbonneau,D. and Sulakvelidze,A. 2016-07-02 — GenBank