Protein

View in Explore
Genbank accession
XBA08979.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect2
Probability 0,54
Protein sequence
MPVIHVQKMPGTPKETGIVPAGTNLWKWLNKSNLPASISVAVNGRVLDEDDELSFCLRDGDVVNVYCQPSGAIGDLIGAILKPVTKIFSFLTPKVSTPKTDTSSKTSPNTSLKAQTNIARNGEARPDNFGQIRAFPDLLQESLFEYINNIKYVTEFMNFGLGKYDVSSVRYSESNLGSLAGASYTIYQPGEVIPVVYEPYAFDDVDGQELYGPNELNTNPPPVVIETATTTTVTETEFAGGQIAVKIPKDSEFDYFVDLTMPHDVVFKLNITYAQGGGASVTENITLSGRLISATETDDGGLPPVNYWYTFIINSINYSGAPISSLNGVTINKTYFNLTDNQPIVSGPYFSPIDGDQLWVHLQHQTNDGNDFSVLIEWWKIDDDNVQIPGTYQSMNYYQDVDRNDTFYYTIKLTPSAGTGRYAIQMRRTNNSSDTSILQLEEIHSIVTRTNVSYPDDTVVKVVVRATENATGSRDRKYNALITRHTIGYNRDTGTVRYTLAPSRSFADAVLHNWLITAGNPENTIDIVKLYEIADSLPDERLGCFDYTFDDEDKSIGERLQTICDAARVTAFWDDGVMSFSRDEKREYPATVFNTRNTQSDGYKLSYDISLPGTYDGVNVEYRDPTTNKQANVYYRITDSGIVEGEPTKAKKFDMLYVRNRYQAVDRAILECRRLIYSRRSMEIKALSDGEYVNVGDMIQVVDMYDDVQQTGVIEARNGNVFTTSEQLTADDNLYVVITSSDGSTSDRLPATVTGLHTFTCNLPTDFQLNIWDGASVQSESRYVLSTEKELDTTLWVVSQKNPGSDGTTTLTMSEYSDDMYEYVIPSS
Physico‐chemical
properties
protein length:828 AA
molecular weight: 92352,48000 Da
isoelectric point:4,54947
aromaticity:0,10145
hydropathy:-0,39420

Domains

Domains [InterPro]
DC_0118
STR
1–670
DC_0118 DC_0808
NF040662
Unmapped
356–822
NF040662
XBA08979.1
1 828
Architecture
STR
RBD
STR 1-670 | RBD 686-827 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage PHA46_2
[NCBI] 		3118527 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XBA08979.1 [NCBI]
Genbank nucleotide accession
PP216514 [NCBI]
CDS location
range 19794 -> 22280
strand +
CDS
ATGCCAGTAATTCATGTTCAGAAGATGCCAGGCACGCCGAAAGAAACGGGGATTGTGCCAGCGGGGACAAACCTGTGGAAGTGGCTGAATAAATCAAACCTACCAGCCAGCATTTCAGTTGCGGTAAATGGCAGAGTGCTTGATGAAGATGATGAGCTTTCATTCTGTCTGCGCGATGGCGACGTGGTCAACGTTTATTGCCAGCCGTCCGGCGCAATTGGCGACCTTATCGGTGCGATACTGAAACCAGTAACGAAGATTTTCTCATTCCTTACGCCGAAAGTATCCACACCAAAAACTGATACCAGCTCAAAAACATCACCGAATACCAGCCTAAAGGCGCAAACCAACATTGCGCGCAACGGCGAGGCGCGTCCTGATAACTTCGGGCAGATTCGCGCATTCCCTGATTTGCTTCAGGAATCATTATTTGAATACATCAACAATATTAAATATGTCACAGAGTTCATGAATTTTGGCCTCGGTAAATATGATGTATCATCCGTGCGTTATTCTGAGTCAAACCTCGGTTCACTGGCTGGCGCTAGCTATACAATTTATCAGCCGGGAGAAGTTATTCCTGTTGTGTATGAACCTTACGCATTTGATGATGTTGACGGTCAGGAACTGTACGGGCCAAACGAACTTAACACCAACCCTCCGCCAGTGGTCATTGAAACTGCAACAACAACCACGGTCACAGAAACGGAATTTGCTGGAGGCCAGATAGCTGTCAAGATACCGAAGGATTCAGAATTCGATTACTTCGTTGACCTAACCATGCCGCATGATGTGGTATTTAAGCTGAATATCACTTACGCACAAGGAGGCGGTGCATCTGTAACCGAAAACATCACGCTATCAGGAAGGCTTATCTCCGCTACCGAAACTGATGATGGAGGTTTACCACCAGTTAATTACTGGTACACATTTATTATTAACAGCATCAACTACTCAGGCGCACCAATATCATCACTGAATGGCGTGACGATTAATAAAACCTATTTCAATCTGACAGATAACCAGCCGATTGTTTCCGGCCCGTACTTTTCGCCGATTGATGGTGATCAGCTTTGGGTGCACCTGCAACACCAGACCAATGATGGTAATGATTTCAGCGTCCTCATTGAATGGTGGAAGATTGACGACGATAACGTTCAGATTCCAGGGACATATCAGTCGATGAACTATTATCAGGACGTGGATAGGAATGACACATTTTACTATACGATCAAGTTAACACCATCTGCTGGCACTGGTCGCTATGCGATTCAGATGCGAAGGACAAACAACAGTTCCGACACGTCAATCCTTCAGCTTGAGGAAATTCACTCAATAGTCACGAGAACAAACGTCTCATATCCAGATGACACGGTGGTTAAGGTGGTTGTGCGCGCTACGGAAAATGCCACTGGCAGCCGTGACAGGAAATATAATGCGTTAATTACACGCCACACCATCGGATATAATCGCGACACTGGAACTGTGCGCTACACGCTTGCGCCATCCCGTAGCTTTGCTGATGCTGTTCTGCATAACTGGCTTATTACCGCTGGAAATCCAGAAAACACGATCGACATAGTGAAGCTGTATGAAATTGCCGACAGCCTGCCTGATGAGCGACTTGGTTGTTTCGACTATACATTCGATGATGAAGATAAAAGTATTGGCGAACGCCTGCAAACAATCTGCGACGCAGCACGAGTCACCGCATTCTGGGATGATGGCGTGATGAGCTTTTCGCGTGATGAGAAACGAGAATATCCAGCAACAGTATTTAACACCAGAAACACGCAGAGCGACGGATACAAGTTAAGTTACGACATCAGCCTTCCAGGGACTTATGACGGGGTTAACGTCGAATACCGCGACCCAACAACGAATAAGCAAGCCAACGTTTACTACCGAATTACCGATAGCGGAATAGTCGAAGGCGAACCAACGAAAGCCAAGAAATTCGACATGCTTTATGTTCGCAATCGATATCAGGCTGTTGACAGGGCAATCCTTGAGTGTCGCCGCCTGATTTACTCCCGTCGTAGCATGGAGATTAAGGCTCTTTCGGATGGGGAATATGTGAACGTTGGTGACATGATTCAGGTTGTCGATATGTATGATGATGTGCAACAGACTGGCGTTATTGAAGCGCGCAACGGAAACGTATTCACAACAAGCGAGCAACTAACGGCTGATGATAATCTTTATGTTGTGATTACCAGTTCTGATGGCAGCACATCAGACAGATTACCAGCAACAGTGACCGGATTGCATACATTCACCTGCAACCTGCCGACTGATTTCCAGCTGAATATATGGGATGGAGCAAGCGTGCAATCTGAATCTCGCTATGTGCTGAGCACTGAAAAAGAACTGGATACCACTCTGTGGGTTGTCAGCCAGAAAAATCCAGGAAGTGACGGTACAACAACTCTGACCATGAGCGAATACAGTGATGACATGTACGAATATGTCATCCCGTCATCGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f104f1fb668738a5bf6cd276a5c7892519f11ea184d010afd772f56a43c592a7
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2990
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and efficacy of Salmonella phage PHA46 cocktail in the control of Salmonella Newport and Typhimurium internalized into cherry tomatoes Arista-Regalado,A.D., Viera-Segura,O., Aguilar-Montes de Oca,S., Hernandez,L., Gonzalez-Aguilar,D.G. and Barba-Leon,J. 2024-07 — GenBank