Protein

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Genbank accession
WMX18746.1 [GenBank]
Protein name
tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,64
Protein sequence
MALISQSIKNLKGGISQQPDILRYPAQGSEQINGWSSETEGLQKRPPLLFVKTLGDQNVIGASPLIHLINRDAQERYCVSFTGTGIKVHGLDGKAYAVSGAMNYVTTSNPRNDLRMVTVADYTFIVNRNYEVKSSGVINYELNERRTALVNVRGGQYGRTLAINIDGSEVSIKIHSGSGAGAETASEQTDAQWIINQLVTKCRANAAWSGWTFNEGTGYIQIIAPVDITSIATKDGYGNQLMNAIMHTAQSFAKLPIEAPNGYTVRIVGDTSKTADQFYVQYDAVKKVWKEVAGWGIETGFMNSSMPHALVRQADGTFKLQELPWSTRQCGDDDTNPLPSLVGQKINDVFFFRNRLGFLAGENIVMSRTSKYFNLFPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLSAAGVMSSKTVELNLTTEFDVSDAARPYGIGRGVYFASPRASYTSLNRYYAIQDTSAVKSAEDMSAHVPSYVPNGVFSIRGSGTENFVSILSSNAKSKIFIYKYLYMEEQIVQQAWGHWEFGSNVEILACDSIGSSMFIMMRNQSHTWMSRVDFTKNSVDFNDEPYRIFMDNKMKIPIAAGSYNDDTYQTVVRPSDHYGCHIYHGKLYVVAHDGQVHEFEEPEGGWPNGVPVLYLSGNWEKQTVFIGLSINFRYVFSKFLIKKTAEDGSSSTEDIGRLQLRRSWVNYEQSGAFTVEVANTSRLFSYAMAGARLGSAALRVGALNVGTGQFRFPVTGNAQLNTVSIISDYTTPLNVIGCGWEGNYLRRSSGI
Physico‐chemical
properties
protein length:793 AA
molecular weight: 87716,67890 Da
isoelectric point:6,20298
aromaticity:0,10845
hydropathy:-0,22282

Domains

Domains [InterPro]
IPR058003
TTP
1–793
IPR058003
WMX18746.1
1 793
Architecture
TTP
TTP 1-793
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WMX18746.1
1 793
Domain Start End Length (AA) Confidence
N-terminal 1 135 135 0,9770
Central domain 136 346 212 0,2876
C-terminal 347 793 446 0,3588
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-135
Central
136-346
C-terminal
347-793

Taxonomy

  Name Taxonomy ID Lineage
Phage Yersinia phage vB_YpEc11
[NCBI] 		3056113 Uroviricota > Caudoviricetes > Autographivirales > Studiervirinae > Helsettvirus
Host Yersinia pestis EV76-CN
[NCBI] 		665028 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Yersiniaceae > Yersinia > Yersinia pestis

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WMX18746.1 [NCBI]
Genbank nucleotide accession
OQ828306 [NCBI]
CDS location
range 24364 -> 26745
strand +
CDS
ATGGCACTTATTAGCCAAAGCATTAAGAACCTTAAAGGTGGAATCAGCCAACAGCCTGACATCTTACGGTACCCAGCGCAAGGGTCTGAGCAGATTAATGGCTGGTCAAGCGAGACTGAGGGACTCCAAAAGAGGCCCCCATTGTTATTCGTTAAGACTCTTGGTGACCAGAATGTCATTGGGGCGTCACCCTTGATTCACCTTATCAACAGGGATGCGCAAGAGCGATACTGCGTGTCATTCACTGGTACTGGAATTAAGGTACACGGCTTGGACGGAAAGGCGTACGCAGTATCTGGGGCCATGAATTACGTTACTACAAGTAACCCTCGGAATGACTTGAGGATGGTAACCGTTGCTGACTACACGTTCATTGTGAATCGTAATTACGAAGTGAAAAGCTCAGGGGTTATCAACTATGAGTTAAACGAACGGCGTACAGCTCTGGTCAACGTTAGAGGCGGTCAGTATGGTAGAACGTTAGCCATTAACATCGACGGCTCAGAGGTTTCCATAAAGATTCACTCAGGCTCTGGTGCGGGTGCAGAAACCGCCTCTGAGCAAACAGACGCACAGTGGATTATCAACCAACTGGTAACTAAGTGTCGTGCCAACGCTGCGTGGTCTGGGTGGACATTTAACGAGGGTACTGGGTACATTCAGATAATCGCCCCTGTAGATATCACGTCGATTGCCACGAAGGATGGCTACGGTAACCAGTTAATGAATGCCATCATGCACACAGCACAGAGTTTTGCTAAGTTACCTATTGAGGCTCCAAATGGTTACACTGTTCGTATCGTTGGGGATACCTCTAAGACCGCTGACCAATTCTACGTGCAATACGATGCAGTCAAGAAGGTATGGAAAGAAGTGGCTGGCTGGGGAATTGAGACAGGCTTTATGAATAGCTCTATGCCTCACGCATTGGTGCGACAAGCAGACGGAACGTTCAAGCTACAGGAACTACCTTGGTCGACTCGCCAGTGTGGTGACGATGATACTAACCCTCTACCAAGTCTTGTAGGCCAGAAGATTAATGATGTGTTCTTCTTTAGGAATCGATTAGGTTTCCTTGCAGGTGAAAACATTGTGATGTCACGGACCTCTAAGTACTTCAACCTGTTCCCTGCGTCTGTAGCTAATCTGTCAGATGATGACCCTATTGACGTAGCTGTGAGTCATAACCGCATCTCAATCTTGAAGTACGCTGTGCCATTCTCAGAGGAACTATTATTATGGTCAGACCAAGCTCAGTTCGTTCTATCAGCTGCTGGGGTAATGTCCTCTAAGACCGTTGAGTTGAACTTAACGACTGAGTTCGATGTGTCAGACGCTGCGAGACCTTATGGAATTGGGCGAGGTGTTTACTTTGCGTCACCACGAGCAAGCTATACGAGCCTCAACCGCTACTACGCTATCCAAGATACATCAGCCGTTAAGTCCGCTGAGGATATGAGCGCTCACGTTCCAAGCTATGTACCTAACGGAGTCTTTAGCATCCGTGGGTCTGGTACAGAGAACTTTGTGTCCATCTTAAGCTCCAACGCTAAGAGTAAGATTTTCATATACAAATATCTCTACATGGAAGAGCAGATTGTGCAGCAAGCATGGGGACACTGGGAGTTCGGTAGTAACGTAGAGATTCTTGCGTGTGACTCTATCGGTTCCTCAATGTTCATTATGATGCGAAATCAGAGTCATACGTGGATGTCACGCGTGGACTTCACCAAGAACTCTGTGGACTTCAATGATGAGCCTTACAGAATCTTTATGGATAACAAGATGAAGATTCCAATTGCTGCTGGTAGCTATAATGACGATACTTACCAAACCGTAGTCAGACCGTCAGACCATTACGGCTGTCATATCTACCACGGTAAGCTATACGTTGTAGCACACGATGGACAAGTACATGAGTTTGAGGAACCAGAAGGCGGTTGGCCTAATGGTGTCCCAGTGTTGTATCTTAGTGGTAACTGGGAGAAACAGACAGTGTTCATTGGGTTGTCTATTAACTTCCGGTATGTATTCAGTAAGTTCCTCATTAAGAAAACCGCTGAGGATGGTAGTTCATCCACAGAGGACATCGGGCGATTGCAGCTACGGCGTTCATGGGTTAACTATGAGCAATCAGGCGCATTCACCGTAGAGGTTGCCAATACCTCACGTCTATTCAGTTACGCTATGGCAGGTGCACGTCTTGGGTCTGCTGCGTTACGTGTAGGCGCTCTTAACGTTGGCACAGGTCAGTTCAGGTTTCCTGTGACGGGCAACGCACAGTTGAACACAGTGAGTATTATCTCTGATTACACCACGCCTCTGAACGTTATTGGTTGTGGTTGGGAAGGGAATTACCTACGACGTTCCTCTGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
cb8202d844cbd61d3571e78d680bb32ac4924070d197a2e65c9ba4cf3933de6d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3165
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Enterobacteriaceae - specific Podoviridae bacteriophages show lytic activity to Yersinia pestis: characterization and application potential Suladze,T., Gorge,O., Kusradze,I., Valade,E., Jaiani,E., Darsavelidze,M., Elizbarashvili,M., Janelidze,N. and Tediashvili,M. 2023-06-30 — GenBank