Protein

View in Explore
Genbank accession
WAX24264.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,74
Protein sequence
MKRNLSVLVIAAIAGSIAAGAMQTLLSAFAVQNELVPPTSGIFTGVQYSQKLGDAFRSLASCNKGATAPANVNGSAVDGLCWIDDSGSPWVVKQYVNGDWAVTGYLDPTNSSYAGIVGGGLGSIAAASTTDLGSVAQATVSITGTTTINGFGASAPDGSIKFVRFGSALKLVNSTALAVPGGYDLVTAAGDRAVVTHLGTGNWEITQYTRASGVPIDVAAVGKYAFSGSEAVPLLHLRGDGSAISRATYPAYFAKVTRAQNGTRTSGNATITAVADTTGFGVGMPVEGTGIGAGCTIASLVANTSITLNSGSCVTSSGTSTVRVFLTGYGVGGDTTTVGLPGCDGRMLAGRDPTGANITSAGSGINGAAFNAYGGGQSSSIADNQLPNVTRTVSVDASTAVWNTVAAGSSVTTAGNSSSFGYVTSMFNGGSSGGGLTNYSSKPGLFSGSITATVAINGGVTQQAFNKMPPTLIADCVVRVTP
Physico‐chemical
properties
protein length:482 AA
molecular weight: 47814,79660 Da
isoelectric point:7,54506
aromaticity:0,06846
hydropathy:0,21992

Domains

Domains [InterPro]
SSF88874
STR
221–472
SSF88874
SSF88874
STR
221–460
SSF88874
WAX24264.1
1 482
Architecture
STR
STR 221-472 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bradyrhizobium phage ppBdUSDA122-1
[NCBI] 		3003362 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bradyrhizobium diazoefficiens
[NCBI] 		1355477 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WAX24264.1 [NCBI]
Genbank nucleotide accession
OP596612.1 [NCBI]
CDS location
range 7918 -> 9366
strand -
CDS
ATGAAGCGCAATCTGTCCGTCCTGGTGATCGCGGCGATCGCCGGCAGCATCGCCGCCGGTGCCATGCAAACGCTGCTGTCGGCCTTCGCCGTGCAGAATGAGCTGGTGCCGCCGACGTCGGGCATTTTTACCGGCGTGCAATACAGCCAGAAGCTCGGCGACGCCTTCCGCTCGCTCGCGAGCTGCAACAAGGGCGCAACTGCGCCGGCGAACGTGAACGGCTCCGCGGTCGACGGCCTATGCTGGATCGATGATTCCGGCTCGCCCTGGGTCGTCAAGCAGTACGTTAACGGCGATTGGGCCGTGACCGGCTATCTCGATCCGACCAATAGCAGCTATGCCGGAATCGTCGGCGGCGGCCTCGGATCGATCGCCGCGGCGTCGACCACGGATCTCGGCAGTGTCGCGCAGGCAACCGTCAGCATCACGGGGACGACGACGATCAATGGCTTTGGCGCCAGCGCGCCGGATGGGTCGATCAAGTTCGTGCGGTTCGGCAGCGCCTTGAAGCTGGTGAACTCGACCGCGCTGGCCGTGCCGGGCGGTTATGATCTGGTCACGGCCGCCGGCGACCGCGCTGTCGTCACGCATCTCGGCACCGGCAATTGGGAAATCACGCAGTACACGCGCGCCAGCGGCGTCCCGATCGATGTCGCGGCGGTCGGCAAATACGCCTTTAGCGGATCGGAGGCAGTGCCGCTGCTGCATCTGCGCGGCGACGGCTCGGCGATCTCGCGGGCGACCTATCCGGCCTATTTCGCCAAGGTCACGCGCGCGCAGAACGGCACGCGCACCAGCGGCAATGCCACCATCACGGCCGTCGCCGATACCACGGGGTTCGGCGTCGGCATGCCGGTCGAGGGCACGGGCATCGGCGCCGGATGCACCATTGCGAGCCTGGTCGCCAATACCTCGATCACGCTCAATTCCGGATCTTGCGTGACCTCGTCGGGCACCTCGACCGTGCGCGTGTTCCTGACCGGATACGGTGTCGGCGGCGATACCACGACGGTGGGGCTGCCGGGCTGCGACGGGCGCATGCTGGCCGGGCGCGATCCGACCGGCGCAAACATCACCAGCGCCGGATCCGGAATCAACGGAGCGGCATTCAATGCTTATGGTGGGGGGCAGAGCAGCAGCATCGCGGATAATCAGCTTCCGAACGTCACGCGGACAGTTTCAGTCGATGCGTCGACCGCTGTTTGGAATACGGTTGCTGCCGGTTCGAGTGTCACAACTGCAGGCAACAGCAGCTCATTCGGTTATGTCACGAGCATGTTTAACGGCGGCTCGAGTGGCGGCGGGTTGACAAACTATTCGTCTAAACCAGGCCTGTTCTCGGGTTCGATCACTGCCACGGTCGCCATCAATGGCGGCGTAACGCAGCAGGCGTTTAACAAGATGCCGCCGACGCTGATCGCTGACTGCGTCGTGCGCGTCACGCCTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
3dcafd3a003e16bb6c537045edb8e11ebae130855794bd75ee4b425b42149325
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7373
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Spontaneously produced lysogenic phages are an important component of the soybean Bradyrhizobium mobilome Joglekar,P., Ferrell,B.D., Jarvis,T., Haramoto,K., Place,N., Dums,J.T., Polson,S.W., Wommack,K.E. and Fuhrmann,J.J. — — GenBank