Protein

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Genbank accession
QEI23876.1 [GenBank]
Protein name
DNA stabilization protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGKDFKNADYIDYLPINMLATPKEVLNSSGYLRSFPGIAKRNDVNGVSRGVEYNTAQNAVYRVLGSKLYKGETVVGDVAGSGRVSLAHGRTSQAVGVNGQLIEYQYDGTIKTVSNWPADSDYTQYELGSVRDITRLRGRYAWSKDGTDSWFITDLEDESHPDRYSAQYRAESQPDGIIGIGTWRDFIVCFGSSTIEYFSLTGTTTAGAALYVAQPSLMVQKGIAGTYCKTPFADSYAFISHPATGAPSVYIIGSGQASPIATASIEKIIRSYTAEELATGVMETLRFDSHELLIIHLPRHVLVYDASSSQNGPQWCVLKTGLYDDVYRAVDFMYEGNQITCGDKSEAVTGQLQFDISSQYDKQQEHLLFTPIFKADNARCFDLEVESSTGVAQYADRLFLSATTDGINYGREQMIEQNEPFVYDKRVLWKRVGRIRRLIGFKLRVITKSPVTLSGCQIRLE
Physico‐chemical
properties
protein length:461 AA
molecular weight: 51197,88630 Da
isoelectric point:5,64220
aromaticity:0,10846
hydropathy:-0,28351

Domains

Domains [InterPro]
IPR021098
STR
1–461
IPR021098
IPR021098
STR
3–461
IPR021098
QEI23876.1
1 461
Architecture
STR
STR 1-461
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QEI23876.1
1 461
Domain Start End Length (AA) Confidence
N-terminal 1 117 117 0,7122
Central domain 118 325 209 0,0228
C-terminal 326 461 135 0,5061
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-117
Central
118-325
C-terminal
326-461

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Si3 KFo-2019
[NCBI] 		2609832 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella sp.
[NCBI] 		599 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QEI23876.1 [NCBI]
Genbank nucleotide accession
MK972696 [NCBI]
CDS location
range 21378 -> 22763
strand -
CDS
ATGGGTAAAGACTTCAAGAATGCCGACTATATTGATTACCTGCCAATCAATATGTTGGCTACACCGAAAGAAGTCCTCAACTCATCGGGTTATTTACGCTCATTCCCAGGCATAGCGAAGCGCAACGATGTAAATGGTGTATCGCGTGGTGTTGAATACAATACCGCGCAGAACGCTGTATATCGCGTTTTAGGCAGCAAGCTCTACAAAGGGGAAACCGTAGTAGGTGATGTTGCCGGAAGTGGTCGCGTATCTCTTGCTCACGGTCGAACTTCGCAGGCTGTGGGTGTGAACGGTCAGCTTATCGAGTACCAATACGATGGCACCATCAAAACCGTCTCAAACTGGCCTGCAGACAGCGATTACACGCAGTATGAGTTAGGCTCAGTCCGCGACATTACGCGCTTACGTGGGCGTTATGCATGGTCAAAAGACGGTACTGATTCGTGGTTTATCACTGACCTTGAAGATGAGTCGCATCCTGACAGATACAGCGCACAATATCGCGCAGAGTCGCAGCCTGACGGCATCATCGGCATCGGCACATGGCGAGACTTCATCGTCTGTTTTGGCTCGTCGACGATAGAGTATTTTTCGCTTACCGGAACAACCACAGCAGGAGCAGCGCTTTACGTTGCCCAGCCATCTCTAATGGTACAGAAGGGTATTGCCGGAACATACTGCAAAACGCCGTTCGCTGATTCATACGCCTTTATCAGTCATCCGGCTACTGGTGCACCTTCCGTCTACATCATCGGGTCAGGGCAGGCTTCACCAATTGCGACCGCCAGTATTGAGAAGATTATCCGCTCATACACCGCTGAAGAACTGGCGACGGGTGTGATGGAGACTTTGCGCTTCGATTCTCATGAGCTTCTGATTATTCATCTCCCTCGCCATGTTCTGGTTTACGACGCATCGTCCAGCCAGAACGGGCCGCAATGGTGCGTACTGAAAACCGGGCTTTACGATGACGTTTATCGTGCTGTCGACTTCATGTACGAAGGCAATCAGATAACGTGCGGCGATAAATCAGAAGCAGTGACAGGGCAGTTGCAATTCGACATTAGTAGTCAGTACGACAAGCAGCAAGAACATCTGCTGTTTACTCCCATCTTCAAGGCTGATAACGCCAGATGCTTCGATCTGGAAGTTGAATCCTCGACAGGCGTTGCGCAGTACGCTGACCGACTGTTCCTGTCTGCAACAACAGACGGCATCAATTACGGTCGCGAACAGATGATTGAGCAGAATGAGCCGTTTGTGTACGACAAGAGAGTTTTATGGAAGCGTGTAGGGCGTATTCGTAGATTAATCGGATTCAAACTGCGGGTAATCACCAAATCACCAGTAACACTATCCGGGTGTCAAATTCGTCTGGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c396d853676e93e06824b7986c9062ed24c3970924b79e9dad2c2e2d00bf4bdb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8624
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Salmonella bacteriophage diversity and host specificity revealed by physiological characterization and whole genome sequencing Fong,K., Tremblay,D., Delaquis,P., Moineau,S., Goodridge,L., Levesque,R. and Wang,S. 2019-09-14 — GenBank