Protein

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Genbank accession
QYW06235.1 [GenBank]
Protein name
virion-associated protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGLPVTVYRYTDPGAPQLVNATPSEWINILKKVLVEGYGNKAPLGWTLEFENAAAFKVAFRNSLANGGSGGYFQFWSANGGNTSQQGCYIKCAGDMSAIDVFSKACGLRAATLSNSGKGWEIIGTSRGFYLMQHRTDSPKMLVAANTIFWCYFIGDIHSFYSNDINCFSLISGNNTAGDLPSTPAGSVIGWTTTLSAQLYAVDGVNTSRMYSMTLPFVNTSSPGAPFLNDAEVSNLQHNFVMPYLEIAYNINDASGVPANISTSLPACRGTAPGMKVSSFVGYGNNNWPVDRIFDGITYILLRSVYNNKLWISTGDWYE
Physico‐chemical
properties
protein length:319 AA
molecular weight: 34603,61400 Da
isoelectric point:5,92600
aromaticity:0,12853
hydropathy:-0,03542

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QYW06235.1
1 319
Domain Start End Length (AA) Confidence
N-terminal 1 13 13 0,9603
Central domain 14 212 200 0,0018
C-terminal 213 319 106 0,9990
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-13
Central
14-212
C-terminal
213-319

Taxonomy

  Name Taxonomy ID Lineage
Phage Shewanella phage vB_SspS_MuM16-1
[NCBI] 		2866687 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Shewanella sp. M16
[NCBI] 		2830837 Pseudomonadota > Gammaproteobacteria > Alteromonadales > Shewanellaceae > Shewanella >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QYW06235.1 [NCBI]
Genbank nucleotide accession
MZ568827 [NCBI]
CDS location
range 33290 -> 34249
strand +
CDS
ATGGGATTACCAGTTACAGTTTATCGCTACACAGACCCAGGTGCGCCACAGTTGGTTAATGCCACCCCCTCAGAGTGGATTAACATCCTAAAAAAAGTGCTGGTTGAGGGTTATGGCAATAAAGCCCCGCTAGGCTGGACTCTTGAATTCGAGAATGCCGCAGCGTTTAAGGTGGCATTTAGAAACTCACTCGCGAATGGTGGCTCAGGGGGCTATTTTCAATTTTGGTCAGCTAATGGTGGCAATACTTCGCAGCAAGGTTGTTATATAAAATGTGCAGGGGATATGTCTGCTATAGATGTATTTTCTAAAGCTTGTGGTCTTAGAGCTGCAACACTTTCAAACTCTGGTAAAGGGTGGGAAATTATAGGTACATCAAGGGGATTCTACCTAATGCAGCATCGGACTGATTCACCAAAGATGCTTGTTGCTGCTAACACTATCTTTTGGTGTTACTTCATTGGTGATATTCATAGTTTTTATTCTAATGATATCAACTGTTTTTCACTTATTTCAGGTAATAACACCGCTGGTGATTTACCTTCAACACCTGCAGGTAGTGTCATTGGTTGGACTACGACACTTTCTGCCCAGTTATATGCGGTTGATGGTGTCAATACTAGCCGAATGTATTCAATGACTCTTCCGTTTGTCAATACAAGCTCACCAGGAGCACCATTTCTTAACGATGCAGAGGTGTCGAACTTACAACATAATTTTGTTATGCCGTATTTAGAGATTGCATACAACATCAATGATGCAAGTGGAGTTCCTGCAAATATCAGCACGTCATTACCAGCTTGTCGAGGGACAGCACCAGGGATGAAGGTTTCCTCATTTGTTGGCTACGGTAATAACAACTGGCCAGTTGATCGAATCTTTGACGGGATAACTTACATTTTACTCAGATCTGTTTACAACAATAAGTTATGGATTAGTACGGGTGACTGGTATGAGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
64f7aa2b375ec11c4fbd3ddfadc53bc0b8bbaa223804fadbdc3f48c3711c4c73
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7397
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Identification, Characterization, and Genomic Analysis of Novel Shewanella Virulent Phage from a Gold Mine Bujak,K., Decewicz,P. and Radlinska,M. 2020-09-13 — GenBank