Protein

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Genbank accession
YP_009847416.1 [GenBank]
Protein name
tail fiber protein; host specificity
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MPTFRVRGIGKVGTIKDLPPFELPPEAWSTSNNVRFVGGRIEKMGGTLPVLTTNMPDETPLCVFQKSNTNSIIYGTPTSIYKVDGISHFKISRNLSSTPGQEDFYVYGASPEDRWYYTSLSNSIIMNYKGDNPQGLRPTDDYFVNLPGWGVPSKDGVQKTWRCGRIRAFRNYLIALDMVENGVELPQRVRWSNVSFVNELPPDWVEDDDKRDGGFNDLTDSIGKIVDGHPLRDSFVVYTDKDTYLMDYVGGVFIFNFRKLFSDSGLLAPNCVAEFEGQHFVVAQDDIFIHNGSSRKPVASGRLKEFLINEISGINSQATQVFSNTSRKEIWITYAGTGSLGADKTGWSCNKAAVWNWEYDTWSFYDLPQVYDINMAPPPETGTLSWDQLCGTEANPPDDSIIPPGCEDLWDADKWAEVQWEEYGKDFIRRVIYCASKDKCLYLLDTGTEFTDYDSVTKTNKPRPVVAELVRTHLDMDEAVESTRRYKMVRHIIPQFSGTGEVFVFYGGSENSTNPPTWDGYQVYNIEEDVKVDSWSNNRYPAIKFVDSSGGTWSFTGYDIDFIQEGLR
Physico‐chemical
properties
protein length:568 AA
molecular weight: 64306,00750 Da
isoelectric point:4,75165
aromaticity:0,12852
hydropathy:-0,47007

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009847416.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 90 90 0,7398
Central domain 91 311 222 0,1422
C-terminal 312 568 256 0,7183
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-90
Central
91-311
C-terminal
312-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh_8
[NCBI] 		2591032 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009847416.1 [NCBI]
Genbank nucleotide accession
NC_048775.1 [NCBI]
CDS location
range 52644 -> 54350
strand +
CDS
ATGCCAACGTTTAGAGTTAGGGGGATTGGTAAGGTGGGTACTATAAAAGATTTACCGCCTTTCGAACTCCCACCAGAGGCATGGTCTACTTCCAACAATGTAAGATTTGTAGGTGGAAGAATTGAAAAGATGGGGGGTACACTCCCCGTCTTAACAACGAATATGCCAGATGAAACACCTTTGTGTGTTTTTCAGAAAAGCAATACCAATTCAATAATTTATGGTACACCAACCTCTATTTACAAAGTTGATGGTATTTCTCACTTCAAAATTAGTCGGAATTTAAGTTCGACGCCAGGCCAAGAAGATTTTTATGTGTATGGTGCATCCCCCGAAGACCGGTGGTACTACACATCTCTTTCTAATTCAATCATCATGAACTATAAGGGGGATAATCCACAGGGATTAAGGCCAACAGATGACTACTTTGTTAATCTTCCAGGTTGGGGAGTTCCTTCTAAGGATGGTGTTCAGAAGACTTGGAGATGTGGAAGGATCAGGGCTTTCAGAAACTACCTAATCGCATTAGATATGGTTGAGAATGGAGTTGAACTTCCACAACGAGTTAGGTGGTCTAATGTATCTTTTGTTAATGAACTTCCACCAGATTGGGTTGAAGATGATGACAAAAGAGATGGTGGTTTCAACGACCTAACCGATTCAATTGGGAAAATTGTAGACGGTCACCCATTAAGGGATAGCTTTGTGGTCTATACAGATAAAGATACCTATTTAATGGATTATGTAGGTGGTGTGTTTATCTTTAACTTCAGAAAGTTATTCAGTGATTCTGGACTATTAGCCCCAAATTGTGTAGCAGAGTTCGAAGGTCAGCACTTTGTTGTTGCACAGGATGACATCTTTATTCACAATGGATCCTCTAGAAAACCTGTTGCTTCTGGGAGATTAAAAGAATTTTTAATAAATGAAATTTCAGGTATAAACTCTCAAGCTACTCAAGTGTTTTCAAATACCTCAAGAAAAGAGATTTGGATAACTTATGCTGGCACTGGTTCTTTAGGTGCTGATAAAACTGGCTGGTCTTGTAACAAAGCTGCTGTATGGAACTGGGAGTATGATACTTGGTCGTTCTATGATCTACCTCAAGTCTACGATATTAATATGGCCCCTCCTCCCGAGACTGGTACGCTGAGTTGGGATCAATTGTGTGGTACTGAGGCTAATCCTCCAGACGACAGTATCATTCCACCTGGATGTGAGGATTTGTGGGATGCAGACAAGTGGGCAGAGGTTCAGTGGGAGGAATACGGAAAGGATTTCATCAGAAGGGTTATTTATTGTGCAAGTAAAGACAAGTGTTTGTACTTATTAGACACAGGTACTGAGTTCACTGACTATGACAGTGTTACAAAGACAAATAAACCAAGGCCAGTTGTTGCTGAACTTGTTAGAACCCACTTAGACATGGATGAAGCTGTTGAATCTACAAGACGTTATAAAATGGTACGACACATAATTCCACAATTCTCAGGAACTGGTGAGGTTTTTGTGTTTTATGGAGGGTCAGAGAACTCGACTAACCCACCAACTTGGGATGGTTATCAAGTTTATAATATAGAAGAGGATGTTAAGGTTGATTCGTGGTCTAACAACAGATACCCAGCTATTAAATTCGTAGATTCATCTGGTGGTACATGGTCATTCACTGGTTATGATATAGATTTTATACAAGAAGGACTGAGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9c0837aea53d6b49c26b8189b082209737b0094c2186529b826710af973c27a1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8655
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank