Protein

View in Explore
Genbank accession
QKN88561.1 [GenBank]
Protein name
tail protein
RBP type
TF
Evidence RBPdetect
Probability 0,55
Protein sequence
MIENTQPLKMGITDVYPGYTAIYMQHTAYTDVDVQGKMVWVNGTAQTPDVNIDRYYVFAVGLNPGSPYNLEAAYFDAMVDAELRAERFGMAISDPVATATRAEPTINSYTITAEEVDVGVAPPVLTLDLDGDADLIEAQWAPTGTSNWTGFFYGGFLQTLGVAGLPIGVAIDVRIRGVVNFPDGSTRDVSSWDTLENITLNWGFTPPEKVSNITFQVAKLKEPAERYDVKISWDWEKLDGANAREFVVWRLDKAKYDSNNASDKWAGAEVINAGTAKSVVVTNHPFDREQVYRVATTAWGPESDDVVYADNIIFKIDDTTTIDNSFTNETGIDLTYSHIRGRVWDDTNSVWKQSFNVDAATGNVTIGILDEEGEAPISFTSDGNGNGTVNVKGSVISETINAANFVLTNLNGTQSPQLRSAGKTEYGDSTEGIWMGHEMSGGYRFKFDLGNSAQYIRWDGDTLRISGDVAIGTPQGDRPLYSQVRTIYKAASSTPATPTQTTYPPSGWTVAPPTVPSGQYLYISVGLVDLTTSFLVDGESWSAPALTGGTGAPGQDGTDGTDGADGPGFYSQAISGFNGTFQSSTATSFFQSQFGRPPAKYDVLTQYNPSNPSIATTRQWDTASSGAWGTVALAVHGNMVVDGSLTADALIANTILGTNLHIGNTGGDGVYAGIRGSHTFGSSLAFAAGYTSTTDNTLPNWKWGVTSNGIMYARNSAGSTRVELNPVTDKFSFRGDITAETLTLTGDIPDSIDNSNVTTSSIGAETPSGAQAKADAAKNSAISTAASDATAKANAAEAAANGYTENRIYPNQTSTVIKSANYSQGSDGFSMDINGNAEFNNVVVRGTGYFTDGVFDGTVYAEKIVGDIVSGLVKSNPPSSQSRPGGTTGWIDLSTVVTVSHARPYPRRIQLASAEGYDAIQFMAEVERNVGFILTFQLISSNGTVVWTSSQSFSAIGSSDDNLVTVSFPSVNGYIPANTPAGSYKFRITSNHEIYHAWYMYRSLGTARYPITSQLVAYLFKDSGELS
Physico‐chemical
properties
protein length:1027 AA
molecular weight: 109810,50140 Da
isoelectric point:4,52372
aromaticity:0,10321
hydropathy:-0,24976

Domains

Domains [InterPro]
IPR057550
STR
10–94
IPR057550 IPR057551 IPR057552 IPR057549
IPR057551
STR
100–191
IPR057551 DC_1191
QKN88561.1
1 1027
Architecture
STR
STR
STR
STR 10-94 | STR 100-192 | STR 206-1016 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_ValS_X1
[NCBI] 		2736341 Uroviricota > Caudoviricetes > Demerecviridae > Pogseptimavirus VspSw1 >
Host Vibrio alginolyticus NBRC 15630 = ATCC 17749
[NCBI] 		1219076 Bacteria > Proteobacteria > Gammaproteobacteria > Vibrionales > Vibrionaceae > Vibrio

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QKN88561.1 [NCBI]
Genbank nucleotide accession
MT442039 [NCBI]
CDS location
range 111782 -> 114865
strand +
CDS
ATGATTGAAAACACTCAGCCGCTAAAAATGGGTATCACTGACGTCTACCCAGGATATACGGCTATTTACATGCAACACACAGCCTACACGGACGTAGATGTACAGGGAAAAATGGTTTGGGTCAATGGTACGGCCCAAACTCCTGACGTAAACATCGACAGGTACTATGTATTTGCTGTTGGACTAAATCCAGGCTCTCCGTACAACCTAGAAGCTGCGTACTTCGATGCCATGGTAGACGCGGAGCTCAGGGCTGAACGTTTTGGTATGGCAATCTCAGACCCCGTGGCTACCGCCACGAGAGCGGAGCCAACTATCAACTCTTATACAATTACAGCAGAAGAAGTGGATGTAGGTGTAGCTCCTCCCGTTCTTACATTAGACCTAGACGGGGATGCTGACCTTATAGAAGCCCAGTGGGCTCCTACAGGTACTTCAAACTGGACTGGATTCTTTTATGGAGGTTTCCTACAGACTTTAGGAGTGGCTGGCCTGCCTATCGGAGTCGCTATAGATGTCCGCATCCGCGGTGTCGTTAACTTCCCGGATGGTAGCACCAGAGACGTGAGCTCTTGGGATACTTTAGAGAACATAACCCTTAATTGGGGTTTTACTCCACCAGAAAAAGTTAGTAATATCACCTTCCAAGTAGCTAAGCTAAAGGAACCAGCAGAGAGATATGATGTAAAAATATCTTGGGACTGGGAAAAGCTAGACGGAGCTAATGCTAGAGAATTCGTAGTTTGGAGGCTAGATAAAGCCAAATACGACTCTAACAACGCGTCAGATAAGTGGGCAGGTGCCGAAGTAATTAACGCAGGTACAGCTAAGTCAGTAGTAGTTACTAACCACCCTTTCGACAGAGAGCAAGTGTACCGAGTAGCTACTACAGCTTGGGGACCGGAATCCGATGACGTCGTCTACGCAGATAATATTATATTTAAAATCGACGATACGACGACGATTGATAACTCGTTCACTAATGAGACGGGTATTGACCTAACATACTCCCACATTAGAGGTAGGGTGTGGGATGACACTAACTCTGTGTGGAAACAGTCTTTTAACGTAGATGCTGCTACAGGTAACGTTACAATAGGTATATTGGACGAGGAAGGGGAAGCCCCGATAAGCTTCACGTCCGATGGTAACGGTAACGGTACAGTAAACGTTAAAGGTTCAGTAATCTCTGAGACAATAAACGCGGCTAACTTCGTGCTAACTAACCTAAATGGTACTCAGTCACCTCAGCTGCGTTCCGCTGGTAAGACTGAGTACGGAGACTCTACCGAAGGCATCTGGATGGGGCATGAGATGTCTGGAGGATACAGGTTCAAGTTCGATTTAGGTAACAGTGCTCAGTATATACGTTGGGATGGTGATACTTTAAGGATTTCTGGAGATGTTGCTATAGGCACTCCTCAAGGAGACAGACCGCTGTACTCCCAAGTAAGGACTATCTATAAGGCCGCTTCGTCTACTCCAGCTACTCCTACCCAAACTACTTATCCACCATCCGGTTGGACTGTTGCACCACCTACAGTTCCTTCGGGGCAGTACCTGTATATATCAGTAGGTTTAGTAGACCTTACTACTTCTTTCCTAGTGGATGGGGAGTCTTGGTCAGCTCCTGCGCTTACTGGCGGTACTGGTGCTCCTGGCCAAGATGGTACTGACGGTACTGATGGGGCAGATGGGCCAGGGTTCTACTCCCAAGCTATATCTGGGTTTAATGGAACCTTCCAGTCTAGTACAGCTACTTCATTCTTCCAGTCTCAATTTGGAAGACCACCAGCTAAGTACGATGTACTAACTCAGTACAACCCTAGTAACCCATCCATTGCTACAACTAGACAATGGGATACAGCCTCATCAGGGGCGTGGGGAACAGTAGCCTTAGCAGTACATGGTAACATGGTAGTTGACGGGTCATTAACGGCAGACGCGCTTATAGCAAACACTATCCTAGGTACTAACCTACATATCGGTAATACTGGAGGGGATGGGGTTTATGCTGGTATTCGTGGTAGCCATACCTTCGGAAGTAGTCTAGCGTTCGCTGCGGGATATACTTCTACAACAGACAACACACTACCTAACTGGAAATGGGGAGTTACCTCAAATGGTATTATGTATGCTAGAAACTCTGCGGGTAGTACTAGAGTCGAGTTAAACCCTGTAACGGACAAGTTCTCCTTCCGTGGAGATATCACAGCTGAGACGCTAACACTAACAGGAGACATACCAGACTCCATTGATAATAGTAACGTAACGACGTCTAGTATCGGGGCCGAAACTCCTTCTGGGGCGCAGGCTAAGGCTGATGCGGCTAAAAACTCAGCCATCAGCACCGCAGCATCAGACGCTACAGCTAAAGCCAATGCAGCGGAAGCAGCAGCTAACGGATATACAGAGAATAGGATATACCCTAACCAAACCTCTACAGTTATTAAATCCGCTAACTACTCCCAAGGCAGTGATGGGTTCTCAATGGACATCAATGGTAACGCGGAGTTTAACAACGTAGTAGTTAGAGGTACTGGTTACTTCACAGATGGTGTGTTTGATGGTACTGTATACGCAGAGAAGATTGTGGGCGACATAGTTTCCGGACTGGTCAAGAGCAACCCCCCATCATCACAGAGTAGGCCTGGAGGAACCACAGGCTGGATAGACTTATCTACCGTGGTGACAGTATCTCACGCTAGACCTTACCCTAGACGCATCCAGTTAGCATCCGCAGAAGGATACGATGCAATACAGTTTATGGCAGAGGTAGAAAGAAATGTTGGGTTCATCCTAACGTTCCAGCTAATAAGTTCCAACGGCACTGTAGTTTGGACGTCTAGTCAGAGTTTTAGTGCTATAGGCTCCAGCGATGACAACCTAGTAACTGTATCCTTCCCTAGTGTTAACGGATATATTCCCGCAAATACGCCAGCGGGTAGTTATAAGTTTAGAATAACCTCTAACCACGAAATATACCATGCATGGTATATGTACCGCTCACTGGGTACTGCCAGGTACCCTATTACCTCGCAGTTAGTGGCTTATCTATTCAAAGACTCAGGGGAGTTGTCTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6a2d62fae91f875b17ce372d57293eef7ac9412302263eb749c6c45fa0d63ebb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3044
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biological and Genomic Analysis of Vibrio Phage vB_ValS_X1 Sheds Novel Insights into Evolution and Interaction of Vibrio-phage Zhong,W., Yang,Y., Cai,L., Xu,J. and Zhang,R. 2024-07-29 — GenBank