Protein

View in Explore
Genbank accession
AGN12353.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MKSLITILVLLGSAGAVRAVPVVPNFQQGSMTSHTETESTVTETINSIDYRTGWEYSVTGVGVDNNGEALNPSVSTSTVQIAPTVGTDETGATAAATTSSFDSLNFNGQNNFTISEPGGAFQFTQTYSGPGMTNQTVIQRVTTIQSVTDTTSTFTQ
Physico‐chemical
properties
protein length:156 AA
molecular weight: 16328,65810 Da
isoelectric point:4,15893
aromaticity:0,07051
hydropathy:-0,13718

Domains

Domains [InterPro]
IPR046285
STR
10–156
IPR046285
IPR046285
STR
20–156
IPR046285
AGN12353.1
1 156
Architecture
STR
STR 10-156
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM5
[NCBI] 		536454 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12353.1 [NCBI]
Genbank nucleotide accession
HQ632825.1 [NCBI]
CDS location
range 152838 -> 153308
strand +
CDS
ATGAAAAGTCTTATAACTATATTAGTGTTATTAGGTAGTGCTGGTGCTGTAAGAGCAGTGCCAGTGGTCCCCAATTTCCAGCAGGGTTCAATGACGAGCCACACCGAGACTGAATCTACGGTCACGGAAACTATAAATTCAATTGACTATAGGACAGGATGGGAATACAGCGTTACTGGGGTAGGCGTAGACAACAATGGCGAAGCCCTCAATCCCAGTGTGAGTACATCAACAGTGCAAATAGCACCAACCGTAGGGACAGACGAAACAGGAGCAACCGCAGCAGCGACAACTTCTTCGTTCGATTCATTAAACTTCAACGGTCAAAACAACTTCACGATAAGCGAACCTGGTGGAGCCTTTCAATTTACCCAGACGTATTCTGGACCAGGAATGACCAATCAAACAGTAATACAAAGAGTAACAACAATACAAAGCGTTACCGATACAACAAGTACATTTACCCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
1c5dbfd6e7ad38af44f80b8c18368e7f68ae4bfc3ebcbc92dc60a3fa3f1025d3
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8080
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM5 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank