Protein

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Genbank accession
WPH64040.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MTSSIRVPDTITPLGDFPVVESKDVGGFSTLEATVNEHNEKITKNITQILELAKRGKTFTYSGNTAPDLSGEAHGNYLLVFRAMDQTLSVTTPNPVGGVPDGTMFTIYNDDTDNAVRLTAGNVADKLNGGAISMNIPPENFVSFTYKISDRDFVLLESGYIPAARINIANYIEQKLNADGKLHTEAELETAGFLKGMQVSGDQVSNVRGAKWIHFQGATVSAGKTDQAVVTVHGEVDPTKSVLHFQTIAERNQWSSANGSKYTKVVCIVDRDDNGFVAWYEWDGSKWSEYDAQGVVMSDSDGAIPKNIKTVVFGPGFAIQQAGDQEDAALVTYTEQGGGNGSITLVDDGGDEIPGVNKLHIKGMMITETPNQGGYGPGEAQITSGINWHMAEPDQQYGSSLANEVVVLPPLNTYIDPDKSGAESVKLEIKPGTFEAMQSPSFLAYLQESVEVTGKLDIHGQPTGHPKGAVWFDDVVVPSGPYIALDKVNKAYGIQEADELDPNVSGGMNYLICYRMAFKGKAPNDGFVRIYLREKQVGQQGQNKLLLDVNGHPMAVERYYKAGDKLGHLDVIGVVNAKSIIEFQALSEDSFTDDILNIEDRENGASGLMIQALKSDDKTGRAFLQYMHDTGQDIVFNSHYLGPDRMSIKWYESFDQPLVDHTAGSNQTLTDGMEFYIVNDMKSGSVDGHIVFQDNGTDIADFHFGKIFSADETRMLRGRVVTVTATLTDKDDAYNISLMKWSGKPDEFTNAIFTSRDNNIPEWTDGWSLVDTLFISEDAVSGEHTATKDFTVPADANNYAVIIYPVSAQSPMTLKLKQFELDVKDPFVGFDIHAPVLDSEKHLIYSDEHKQFSQDSQGFASLRYTINSDEGFGLPMPIGMVKGGNADIELDTSATVANISGSQAKGGEGCIKFNADGNARIVSNLRLWNEKSTDSIVKFWWAEVSPDGSSVKKLPDSVFTATVKAGAKGTHYAFGYDHDVEQGDRLSLRASVDASDGAFLQATPSVTPMLSNYIEFKELKDSGDDPFASVIDYSQFDRVYTGILTATKMVANASSVTFNLDIPDDMNISVLSAVKELKDLSVRPVRALDWVYSNKDKTLTVSFGETVLLGQVTIGIYT
Physico‐chemical
properties
protein length:1118 AA
molecular weight: 121891,59970 Da
isoelectric point:4,67008
aromaticity:0,09034
hydropathy:-0,29750

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPH64040.1
1 1118
Domain Start End Length (AA) Confidence
N-terminal 1 467 467 0,9244
Central domain 468 666 200 0,4144
C-terminal 667 1118 451 0,5884
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-467
Central
468-666
C-terminal
667-1118

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage vB_VpP_1
[NCBI] 		3092672 No lineage information
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPH64040.1 [NCBI]
Genbank nucleotide accession
OR734989.1 [NCBI]
CDS location
range 26871 -> 30227
strand +
CDS
ATGACAAGCAGCATTAGAGTACCAGACACAATAACACCTTTAGGTGATTTCCCGGTTGTTGAAAGTAAAGACGTTGGCGGCTTTTCAACTCTTGAGGCTACTGTTAACGAGCACAACGAAAAGATCACAAAAAACATAACTCAAATTCTTGAGCTAGCCAAAAGGGGTAAGACTTTTACTTATTCCGGAAATACGGCCCCGGATCTAAGTGGCGAGGCCCACGGTAACTATTTGCTTGTATTTAGGGCTATGGATCAAACTTTAAGTGTTACAACTCCGAACCCCGTTGGCGGCGTTCCTGATGGCACTATGTTTACCATTTATAACGATGACACCGATAACGCCGTAAGACTAACGGCGGGAAACGTTGCGGATAAGCTTAACGGCGGCGCTATATCTATGAACATTCCGCCTGAGAATTTCGTTTCATTCACATACAAGATTTCAGATAGGGATTTTGTTCTATTGGAATCCGGTTACATCCCGGCAGCTAGAATCAACATAGCTAATTACATTGAGCAAAAGCTAAACGCAGATGGAAAACTACACACAGAGGCAGAGCTTGAAACGGCTGGATTCTTGAAGGGAATGCAAGTTTCTGGTGATCAGGTTAGCAACGTGCGCGGCGCTAAATGGATTCATTTCCAAGGTGCAACAGTAAGCGCGGGCAAAACAGATCAAGCCGTTGTTACTGTTCATGGGGAAGTAGATCCAACTAAATCCGTTTTACACTTCCAAACTATCGCAGAAAGAAATCAATGGTCATCGGCCAACGGTTCGAAATATACAAAGGTTGTTTGTATAGTTGATAGGGATGATAACGGTTTTGTGGCTTGGTATGAATGGGATGGCTCCAAATGGTCTGAATATGATGCTCAGGGCGTTGTTATGTCGGATTCTGATGGGGCTATACCTAAAAATATTAAAACGGTTGTCTTTGGTCCGGGGTTTGCTATTCAGCAAGCTGGCGATCAAGAAGATGCGGCGCTTGTCACATATACCGAGCAAGGCGGCGGTAATGGCTCTATAACTCTTGTTGATGATGGCGGAGATGAGATACCCGGCGTTAATAAGTTGCACATCAAAGGCATGATGATTACAGAAACGCCAAATCAAGGCGGCTATGGTCCCGGAGAGGCGCAAATAACATCCGGTATAAACTGGCACATGGCAGAGCCGGATCAACAGTACGGTTCTTCTCTTGCTAATGAGGTTGTTGTTTTACCGCCTTTAAATACATATATAGACCCGGATAAATCTGGCGCGGAATCCGTCAAGCTTGAAATTAAGCCGGGTACGTTTGAGGCAATGCAATCGCCTAGCTTCCTTGCTTATCTACAAGAGTCTGTAGAGGTAACAGGTAAGTTAGATATTCACGGCCAACCTACAGGACATCCGAAAGGTGCGGTGTGGTTTGATGATGTGGTTGTTCCTAGTGGGCCATACATTGCATTAGATAAAGTTAATAAAGCTTATGGCATTCAAGAGGCTGACGAATTAGATCCAAATGTTAGCGGCGGAATGAATTATCTAATCTGCTATCGCATGGCGTTTAAAGGGAAGGCCCCTAATGATGGCTTTGTTAGAATCTACCTACGTGAAAAACAAGTAGGCCAGCAAGGGCAAAACAAACTATTACTTGATGTTAACGGCCACCCTATGGCTGTAGAGAGATACTACAAAGCTGGTGATAAGCTTGGTCATTTAGATGTTATAGGGGTTGTTAACGCAAAGAGTATCATTGAGTTTCAAGCGTTATCTGAAGACTCTTTCACTGATGACATTCTTAATATTGAAGATCGTGAAAATGGCGCATCTGGATTAATGATCCAAGCTCTAAAATCGGACGACAAAACAGGTCGGGCATTTCTTCAATATATGCATGACACAGGTCAAGATATTGTATTTAACTCTCACTATCTCGGCCCTGATAGGATGTCTATAAAATGGTATGAGAGCTTTGATCAGCCTTTAGTTGATCACACAGCCGGAAGCAATCAAACACTTACTGATGGCATGGAATTTTATATCGTTAATGATATGAAATCTGGCAGTGTTGATGGTCATATTGTGTTTCAAGATAACGGTACTGATATCGCTGATTTTCATTTTGGTAAGATATTTAGTGCAGACGAAACACGCATGTTGCGCGGTAGAGTTGTTACTGTAACGGCAACGCTGACCGATAAAGACGATGCTTATAATATCTCCCTTATGAAGTGGTCAGGTAAACCAGATGAGTTTACCAATGCCATTTTCACTAGCCGTGATAACAATATTCCTGAATGGACTGATGGATGGTCTTTGGTTGATACGCTTTTTATTTCTGAAGATGCTGTAAGCGGAGAGCATACAGCAACTAAAGATTTTACCGTTCCCGCTGATGCTAATAACTACGCAGTAATCATTTATCCTGTTTCCGCTCAATCACCAATGACTTTGAAGCTAAAACAGTTTGAACTTGATGTTAAAGATCCATTTGTTGGATTTGATATTCACGCGCCAGTTTTGGATAGTGAGAAACACCTAATCTATTCTGATGAGCACAAACAATTCTCTCAGGATAGCCAAGGGTTCGCATCATTACGATACACAATAAACAGTGATGAGGGTTTTGGCTTGCCTATGCCTATAGGTATGGTTAAGGGTGGAAATGCGGATATAGAGCTTGATACATCAGCTACAGTAGCAAATATATCTGGTTCTCAGGCTAAAGGCGGCGAGGGGTGTATTAAATTTAATGCTGATGGCAATGCTCGCATAGTTTCAAATTTAAGGCTTTGGAACGAAAAAAGTACAGATTCAATAGTTAAATTCTGGTGGGCGGAGGTTAGCCCGGACGGAAGCTCAGTCAAAAAATTACCTGATTCAGTGTTTACGGCAACCGTGAAAGCAGGGGCCAAGGGTACACATTATGCCTTTGGTTATGATCATGATGTTGAGCAAGGTGATAGATTATCACTCCGCGCATCGGTTGATGCTTCAGATGGAGCATTTCTACAGGCAACGCCAAGCGTAACGCCTATGCTATCAAACTATATTGAGTTTAAAGAGTTAAAAGATTCTGGCGATGATCCTTTTGCTAGTGTAATCGACTACTCACAATTTGATCGCGTTTATACCGGGATTCTGACAGCTACAAAAATGGTAGCAAATGCATCATCAGTAACATTCAATTTAGATATTCCTGATGATATGAATATTTCAGTTTTAAGTGCCGTTAAAGAACTTAAAGATCTGTCTGTTCGCCCGGTTCGCGCCCTTGATTGGGTTTACAGCAACAAAGATAAAACTTTAACGGTTAGTTTTGGGGAAACTGTTCTATTAGGACAAGTAACTATAGGTATATACACATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
e945d991ebe5850e67bbc927b6e9fac081459f68614abfe35e62e113e83e16ae
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,4487
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, identification and host range expansion of a novel lytic Vibriophage vB_VpP_1 and its application of biocontrol against Vibrio parahaemolyticus in oyster Li,F., Zhang,D.F., Bai,W.T., Li,X.P. and Li,J.R. 2022-04-07 — GenBank