Protein

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Genbank accession
AZB50572.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,81
TF
Evidence RBPdetect2
Probability 0,62
Protein sequence
MAYQINPFTGKLDITPFSLDGAGKIPSDYLPSYVDDVVEYDDLASFPGTGETGKIYVAKDTGYTYRWTGSVYVRIGSGGEVNLNLGSEGSPSLYFTGDTNTGLYSPGADQLALSTSGTGKLFIDSAGKVTVKGVGTAAFVVEGTAPDNSLVVKGSTGNVGIGTSLPYALLHVNGAIRSSFAGDGSDYIGWGSGGSSAKYAYIASTDEGPQDVGLSFNVTTNAGFSNIEAIRIDDLGNVGIGTTSPGVALDVNGDARADGLYGYSDTNTGIEFPGSDVIVFKEGGAEAARIDSDGRLLVGTSSASTLRGIIVPKIQTEATSATQNGISLFTNVASSSGPFLIFGKSRGTTAGSNTVVQNGDALGNLLFVGADGTDRASYGASIGAYVDGTPGSNDMPGRLVFSVTADGAASPTERLRITSAGVLQVADAGDIAVGTTTGTKIGTATTQKLGFYNATPVVQPAAVADATDAATVITQLNDLLAKLRTLGIIAT
Physico‐chemical
properties
protein length:491 AA
molecular weight: 49745,34280 Da
isoelectric point:4,38225
aromaticity:0,07739
hydropathy:0,03198

Domains

Domains [InterPro]
DC_0680
STR
35–156
DC_0680 DC_1386 G3DSA:6.10.140.1630
AZB50572.1
1 491
Architecture
STR
STR
RBD
STR 35-156 | STR 178-355 | RBD 441-491
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZB50572.1
1 491
Domain Start End Length (AA) Confidence
N-terminal 1 114 114 0,8808
Central domain 115 313 200 0,1640
C-terminal 314 491 177 0,9610
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-114
Central
115-313
C-terminal
314-491

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-H1
[NCBI] 		2488632 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Synechococcus sp. WH 7803
[NCBI] 		32051 Bacteria > Cyanobacteria > Oscillatoriophycideae > Chroococcales > Synechococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZB50572.1 [NCBI]
Genbank nucleotide accession
MK105819.1 [NCBI]
CDS location
range 29139 -> 30614
strand +
CDS
ATGGCATATCAGATCAACCCGTTCACCGGCAAACTTGACATCACGCCGTTCTCTCTGGATGGCGCTGGCAAGATCCCCTCGGATTATCTGCCCAGCTATGTAGATGATGTTGTTGAGTACGACGATCTTGCTAGCTTTCCTGGCACGGGCGAGACCGGCAAGATCTATGTTGCCAAGGATACTGGCTACACGTACCGGTGGACAGGATCGGTCTATGTGCGGATCGGCAGCGGTGGTGAAGTCAATCTCAACCTTGGATCAGAAGGTAGCCCGTCTCTGTATTTCACAGGAGACACCAACACCGGCCTTTACTCCCCTGGCGCAGACCAACTAGCCCTGAGCACTAGTGGCACTGGGAAACTTTTCATTGATTCTGCTGGTAAGGTAACTGTTAAAGGCGTAGGAACTGCTGCGTTTGTTGTTGAAGGAACTGCGCCAGACAATAGCCTAGTTGTTAAGGGTTCCACAGGCAACGTAGGCATAGGGACTAGTTTGCCCTATGCGTTACTACATGTTAATGGTGCTATTCGAAGTTCTTTTGCTGGAGACGGCTCTGATTATATTGGTTGGGGCAGCGGCGGTAGCTCAGCTAAATATGCTTACATTGCCTCAACAGACGAAGGCCCTCAAGATGTCGGCCTTTCGTTTAATGTAACTACAAATGCTGGATTTTCAAACATTGAAGCAATCAGGATTGATGACCTAGGCAACGTAGGGATTGGCACTACAAGTCCTGGCGTTGCACTCGATGTAAACGGAGATGCCCGTGCTGACGGACTTTATGGGTACAGTGACACCAACACAGGCATCGAGTTTCCTGGGTCTGACGTAATTGTATTCAAGGAAGGTGGTGCAGAGGCTGCCCGCATCGACAGCGACGGCAGGCTCTTAGTTGGTACGTCTAGTGCGTCTACCTTAAGAGGAATCATTGTTCCAAAAATTCAAACAGAAGCAACAAGTGCAACTCAAAATGGAATTTCGCTGTTTACCAACGTTGCTTCTTCCTCTGGACCTTTCTTGATTTTTGGAAAATCTAGAGGAACTACTGCCGGCAGTAATACAGTTGTCCAAAACGGTGATGCACTAGGTAATTTACTTTTTGTTGGCGCTGATGGTACTGATCGCGCTAGTTACGGTGCATCAATTGGTGCTTATGTAGACGGCACCCCTGGGTCAAATGACATGCCAGGGCGCCTAGTGTTCTCCGTTACTGCGGATGGGGCAGCATCTCCGACGGAGCGGCTTCGCATTACTTCGGCTGGCGTGTTACAAGTTGCTGATGCTGGCGACATCGCCGTAGGCACAACCACCGGCACCAAGATCGGCACCGCCACCACGCAGAAACTGGGCTTCTACAACGCCACGCCTGTGGTGCAACCTGCTGCTGTTGCTGATGCCACTGATGCCGCAACCGTCATCACGCAGTTGAATGACTTGCTGGCAAAACTGCGGACCCTTGGGATTATCGCTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
98119bd272d54350595fe3154db58ae4996667ac13f5e1ce6fc71f37ffe8c000
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7474
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Cyanophage S-H1 from the coastal water of Huang Hai Liu,X. 2020-05-25 — GenBank