Protein

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Genbank accession
AMQ65908.1 [GenBank]
Protein name
baseplate wedge subunit protein
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MSNLLSKFKQNQIADLIDSIDSPVVSVNIVAGGSGYANGDNLVFDGDGEPEASGKIFTSNTGAVAYVAMTNGGSYVVTPNVTIQTANGFGAALQAKLDNDNFYVFAARPKPYQPDDGVAEPNWENDYDSFFFMHEQMYFGRKLANTDVSFMVRTRPWVANTIYAEYDDKDHNFPSSAFYVMTSDNHVFKCIYNNNRAPSLTEPNVLQTEGLPATLSDGYRWKYMYTMTGPDRTKFSTQNFSPAKQNPEVQAGAIPGGILNIKVEAGGSNFPTNSGNILSIDGNRITIAANASAQTNYYANSTITIFGAGNVITNRRITESFLQGNNKIVVVANSFNSNQASQGYSYSIAPTLQVVGDGTGFEGYFTVNPLNQSIVSVEVIDAGTNYNQAVATAISGTGFGQGAQLRPIISPKGGHGSDTFGELYCQHVGITAEFANTFQFPTDVTMRTVGLLKNPTVNGQLFTELSFNQCSNVAVSNTTAQNFDLGETVIGNVSRARGQVAFSNSSLLIITGYKGGFIPGEIINGQDSGVQFTVTAVQSQPEIDVYSGEILYIQNITPTERSPTTAEQLKLCIRL
Physico‐chemical
properties
protein length:575 AA
molecular weight: 61961,03330 Da
isoelectric point:4,78007
aromaticity:0,10435
hydropathy:-0,20835

Domains

Domains [InterPro]
IPR036327
STR
76–257
IPR036327
AMQ65908.1
1 575
Architecture
STR
STR 76-257 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMQ65908.1
1 575
Domain Start End Length (AA) Confidence
N-terminal 1 445 445 0,7959
Central domain 446 564 120 0,1249
C-terminal 565 575 10 0,4748
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-445
Central
446-564
C-terminal
565-575

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas phage vB_SmaS-DLP_6
[NCBI] 		1651816 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMQ65908.1 [NCBI]
Genbank nucleotide accession
KU682439 [NCBI]
CDS location
range 155314 -> 157041
strand +
CDS
ATGAGCAACCTCCTCTCCAAGTTCAAGCAGAATCAGATCGCTGACCTGATTGACAGCATCGACAGCCCAGTGGTGTCGGTGAACATTGTTGCGGGCGGCTCAGGCTACGCCAACGGCGACAACCTCGTGTTCGATGGTGACGGCGAGCCGGAAGCATCTGGCAAGATCTTCACGTCTAACACTGGTGCTGTTGCGTACGTCGCAATGACCAACGGTGGCTCTTACGTTGTCACGCCAAACGTGACGATTCAGACTGCCAACGGTTTTGGTGCTGCTCTGCAAGCCAAGCTCGACAACGACAACTTCTATGTGTTCGCAGCGCGCCCGAAGCCGTATCAGCCGGACGATGGCGTCGCTGAGCCAAACTGGGAGAACGATTACGACTCGTTCTTCTTCATGCACGAGCAGATGTACTTCGGTCGCAAGCTCGCAAACACCGATGTCAGCTTCATGGTGCGCACGCGCCCGTGGGTTGCCAACACGATCTACGCTGAGTACGACGACAAGGATCACAACTTCCCGTCGAGCGCATTCTATGTCATGACGTCTGACAACCACGTCTTCAAGTGCATCTACAACAACAATCGTGCTCCATCGTTGACAGAGCCAAACGTGCTGCAGACTGAAGGTCTGCCGGCTACGCTGAGCGACGGCTATCGTTGGAAGTACATGTACACCATGACTGGTCCGGATCGTACGAAGTTCAGCACTCAGAACTTCAGCCCGGCGAAGCAGAATCCTGAAGTGCAGGCTGGTGCAATTCCTGGTGGTATCCTCAACATCAAGGTCGAGGCGGGCGGTTCCAACTTCCCAACCAACAGTGGCAACATCCTGTCGATTGATGGCAACCGCATCACGATTGCTGCCAACGCTAGCGCGCAGACCAACTACTACGCGAACAGCACGATCACGATCTTTGGTGCTGGCAACGTCATCACCAACCGTCGCATCACAGAGTCGTTCCTTCAGGGCAACAACAAGATCGTCGTTGTCGCGAACAGCTTCAACTCAAACCAAGCATCGCAGGGCTACAGCTACAGCATTGCGCCTACGCTACAGGTCGTTGGCGATGGTACTGGCTTCGAGGGCTACTTCACAGTCAATCCTCTGAACCAGTCGATTGTCTCTGTCGAAGTCATTGACGCTGGCACGAACTACAACCAAGCAGTCGCAACAGCAATCAGCGGCACCGGTTTCGGTCAGGGCGCACAGCTCCGCCCGATCATCTCGCCGAAGGGCGGTCACGGTTCCGATACGTTTGGTGAGCTGTACTGCCAGCACGTTGGCATCACTGCGGAATTCGCGAACACGTTCCAGTTCCCGACCGATGTTACGATGCGCACCGTTGGTCTGCTGAAGAACCCAACTGTCAACGGTCAGCTGTTCACCGAGCTGTCGTTCAACCAGTGCTCCAACGTTGCTGTCTCGAACACCACTGCTCAGAACTTCGATCTCGGAGAGACTGTCATTGGTAACGTGTCGCGTGCGCGCGGTCAAGTTGCGTTCTCAAACAGCAGCCTGTTGATCATCACTGGCTACAAGGGCGGTTTCATTCCTGGCGAGATCATCAACGGTCAGGATTCCGGTGTACAGTTCACCGTTACCGCCGTCCAGAGTCAGCCAGAGATCGACGTGTACAGCGGCGAAATCCTTTACATCCAGAACATCACGCCAACTGAGCGCAGCCCGACCACTGCTGAGCAGCTGAAACTCTGCATCAGGCTTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
cfcb1c1d906be912b0d659fe77eeb3c963de6f019f0c9c91c8402933645c4123
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6848
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The isolation and characterization of chimeric Stenotrophomonas maltophilia phage DLP6 Peters,D.L. and Dennis,J. 2017-03-14 — GenBank