Protein

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Genbank accession
ARB06072.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MRSSDRIDSADGSVDIAFDVDLKDDVFALNAAQSGWVYFIGHNNRVGRVYVAAGIAFPLRVSCVLSAGTEPTDIVGLV
Physico‐chemical
properties
protein length:78 AA
molecular weight: 8302,23990 Da
isoelectric point:4,47842
aromaticity:0,08974
hydropathy:0,31282

Domains

Domains [InterPro]
DC_0304
STR
1–78
DC_0304
IPR061180
Unmapped
20–78
IPR061180
ARB06072.1
1 78
Architecture
STR
STR 1-78
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Dinoroseobacter phage vB_DshS-R5C
[NCBI] 		1965368 Uroviricota > Caudoviricetes > Nanhaivirus >
Host Dinoroseobacter shibae
[NCBI] 		215813 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Rhodobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
ARB06072.1 [NCBI]
Genbank nucleotide accession
KY606587.1 [NCBI]
CDS location
range 6296 -> 6532
strand +
CDS
ATGCGCTCCTCGGACCGCATCGACTCGGCGGATGGGTCGGTCGACATTGCTTTCGACGTTGACCTGAAAGACGACGTCTTCGCGCTCAATGCAGCGCAGTCCGGGTGGGTGTATTTTATCGGGCACAACAATCGAGTCGGTCGCGTCTACGTCGCAGCAGGCATCGCGTTCCCGCTGCGCGTCTCTTGCGTTCTCTCCGCAGGGACCGAACCCACCGACATCGTGGGGCTGGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6a527b394ce441deaa0fd569bd00aacfc2d71808828ee5a6939519be4cc8b639
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8668
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A novel roseosiphophage isolated from the oligotrophic South China Sea Yang,Y., Cai,L. and Zhang,R. 2017 28505134 GenBank