Protein

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Genbank accession
XRM23127.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MGFFAGKYSDGKTVLSLNTESGGDINRHYSPNANSIFHSDMPFVLVDGTYEAALGNAGNGFFVCQMPSDIINIKSNDPGRVILTAIEINGTHRAFLNGTQSQVGQFTAFFEDPPIGRAGAEVGLTSAFASGNSLAHGTYIYNSGLGHEESIARQGTGGTISQASGFNLYRPGGAYAGEAIGRAWTLAGFPAGASTVPIDGGNADYWHPNWQAPIGAAYRGHNWFYVCNSNIRGYVGKKGTVPANVNLLYQSPTYPDKVYICKGSTSNLAAQAAKKVYVQDWYNITPTKVIWYVLNLRYSNGNMGVSGNPFTGSDILITPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDTTARCEIVGSSNGSLWSPVDYGGAKSQISIYKFGAGKQWYVNSNNNTIGNEHGAVWSPSTVPLRLFPNNVASTYVGDDITPAYPGAGNYYTALATIGLGLPNANATVILTTEVIMGNINTAGGAIRTYGGAAWQVQGRRQHSYTEGDGIFHQILTLPPGYLVPYHSTTAYSYTQTWASRPDELTFRRNGYIYTIKNLGNGNAELGVVIHADEAAAIFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:595 AA
molecular weight: 63821,35290 Da
isoelectric point:8,12123
aromaticity:0,12101
hydropathy:-0,20168

Domains

Domains [InterPro]
IPR059609
RBD
1–595
IPR059609
XRM23127.1
1 595
Architecture
RBD
RBD 1-595
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XRM23127.1
1 595
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,1284
Central domain 11 209 200 0,6433
C-terminal 210 595 385 0,8533
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-595

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SaI_NFG_5581
[NCBI] 		3378340 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica subsp. enterica serovar Infantis
[NCBI] 		595 Pseudomonadota > Gammaproteobacteria > Enterobacterales > Enterobacteriaceae > Salmonella > Salmonella enterica

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XRM23127.1 [NCBI]
Genbank nucleotide accession
PQ488695 [NCBI]
CDS location
range 99877 -> 101664
strand -
CDS
ATGGGTTTTTTCGCTGGAAAATATAGCGATGGTAAGACCGTACTATCTTTAAATACTGAATCTGGTGGTGACATTAATCGTCACTATAGTCCAAATGCTAATAGTATTTTTCATAGTGATATGCCATTTGTCCTAGTTGATGGTACTTACGAGGCTGCATTAGGCAATGCTGGAAATGGGTTTTTTGTATGTCAGATGCCTTCTGACATAATAAATATTAAATCCAACGACCCAGGTAGAGTTATACTAACTGCCATTGAGATTAATGGTACTCATAGGGCTTTTCTTAATGGTACTCAATCTCAGGTTGGTCAATTCACTGCATTTTTTGAAGACCCACCTATTGGTAGGGCGGGTGCCGAAGTAGGTCTTACGTCAGCTTTTGCATCAGGTAACAGCTTAGCACATGGCACCTATATCTATAACTCTGGTTTAGGCCATGAAGAGTCAATTGCTAGACAGGGTACAGGTGGTACCATATCTCAAGCTTCTGGGTTTAATTTATATAGGCCGGGAGGAGCATATGCTGGTGAGGCTATAGGTAGGGCATGGACTTTAGCAGGATTTCCAGCAGGAGCGTCTACAGTACCTATAGACGGTGGTAATGCTGACTACTGGCATCCTAACTGGCAAGCTCCTATAGGGGCCGCCTATAGAGGACATAATTGGTTTTACGTTTGTAACTCTAATATACGAGGTTACGTAGGTAAAAAGGGCACAGTACCCGCTAATGTTAACTTATTGTATCAATCTCCTACTTACCCTGATAAGGTTTATATATGTAAAGGTTCAACATCTAATCTAGCAGCACAGGCCGCTAAGAAAGTGTATGTGCAGGATTGGTATAACATAACTCCTACTAAGGTTATTTGGTATGTACTTAATTTGAGATATTCTAATGGTAATATGGGTGTATCTGGTAATCCATTTACTGGGTCAGATATACTTATAACTCCATCTAATTTTACTATAAAGGGGGTTAGTTTACCAAATACTGGATATAAGTTTATCAACCAAAATGCTTTTGGTAACTTAGGCTATAGGCCCGATATGGAATACGTCGGAAATAACGCAGCGTACACTGGAGTCTTCGGGGATACTACTGCTCGCTGTGAAATTGTAGGATCTAGTAATGGATCTTTATGGTCTCCTGTAGATTATGGAGGGGCTAAGTCTCAGATTAGTATTTACAAGTTCGGAGCTGGTAAGCAATGGTACGTAAACTCAAATAATAACACTATCGGTAATGAGCATGGAGCTGTGTGGAGTCCTAGTACTGTACCTTTAAGGCTATTTCCTAATAATGTTGCCAGTACCTACGTTGGTGATGATATAACCCCCGCATATCCTGGAGCAGGCAACTATTATACGGCTCTAGCTACTATAGGACTAGGATTACCTAATGCTAACGCAACAGTAATATTAACTACTGAAGTTATTATGGGTAATATTAATACGGCTGGAGGAGCCATACGCACATACGGTGGTGCTGCTTGGCAAGTACAAGGAAGAAGACAGCATAGTTACACGGAAGGTGATGGAATATTCCATCAAATATTAACCTTACCTCCTGGATACTTAGTTCCTTATCACTCCACTACTGCATACAGTTATACTCAAACTTGGGCAAGTAGACCTGATGAGTTAACATTTAGAAGAAACGGATATATTTATACTATTAAAAATCTAGGAAATGGTAATGCTGAGTTGGGCGTAGTTATTCATGCTGATGAGGCTGCAGCTATCTTCCTACCGAGATTAAGAGTAACAGTTCAACGCCTTACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c1c429f00ab7f6c8b1bab0f2f591482e2a5921dbdeb03abac274ec1dcad74543
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2401
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50