Protein

View in Explore
Genbank accession
AMO43569.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTTYATGNPLGSKDPRDLYDNAENFDAAMNDRTNVAWRDRFGVSRKTWFGIEDQVNTFLARSGFELPPLQYVDGSPLTVDRSTQTIERGGNLYSVKLPSSFPVVLSGNWSEDEGLLVVRGDQSLRQEITSTSPSEGSSIIGNATVSVSSVADIKNQTKRPDLKLSLSSYHPLGTSGGGEFIWSPSTPKSQHDGGTIFSPTVPWDGSQATLSDYLDGDGETDPSGAGCWLRIFDDVKLEYFGGVVSETIDSSASYLAALRYCISNNKELHLPDGVIRVNSTAVINGSTTLFSSVKIRGTFKTSGVAAGYVVSRVGSLIYTDGNSALDISFNDFRNENFDIRGVAFVDTSFYPAGTPASPNPAIIIRKGNPDGSSNRYITGNVLEDVAFVSYQDAVKTVGIATGLPAYNYVGPTSFNRVYFYRCGTVMHLQDCTYNHLFMNECLLFDISSQAIFLSKTDSGTGGNVVVTFSNCVFESIWGIMNTANGLTSSSMRNTAVFNSCNREFCGLYGPTGGGGNFAGSPLGYIGHTDVMINGNWERGQAFGETTLPAIDPGAVVFASRYVDVIMNGGQVGSPEYVNVVDVSGTIPASGSLTKTFNVSGSFVLNADVAYDDGFGGHQNVVAYGNPTGSKARDVTGTIISAGLTATYGDGPSGAAFTVTFNNGTASPINVKIRVTNKAGLIVTVS
Physico‐chemical
properties
protein length:685 AA
molecular weight: 72796,91300 Da
isoelectric point:4,86868
aromaticity:0,10073
hydropathy:-0,12277

Domains

Domains [InterPro]
DC_1559
ATT
1–171
DC_1559 DC_1646
IPR059934
RBD
147–232
IPR059934
AMO43569.1
1 685
Architecture
ATT
RBD
STR
ATT 1-171 | RBD 172-232 | STR 233-685
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMO43569.1
1 685
Domain Start End Length (AA) Confidence
N-terminal 1 249 249 0,9946
Central domain 250 573 325 0,9927
C-terminal 574 685 111 0,9814
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-249
Central
250-573
C-terminal
574-685

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage YMC11/07/P54_PAE_BP
[NCBI] 		1777064 No lineage information
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMO43569.1 [NCBI]
Genbank nucleotide accession
KU310943.1 [NCBI]
CDS location
range 12002 -> 14059
strand -
CDS
ATGACTACATATGCCACCGGCAATCCGCTTGGCTCCAAAGACCCGCGCGACTTGTACGACAACGCCGAGAACTTCGACGCGGCGATGAATGACCGTACGAATGTTGCGTGGAGAGACAGGTTCGGTGTTTCGCGGAAAACCTGGTTTGGCATCGAGGATCAGGTAAACACCTTCCTCGCCCGATCTGGGTTCGAGTTGCCACCGTTGCAGTATGTCGATGGTTCCCCGTTGACCGTAGATCGCTCGACGCAGACTATCGAGCGGGGTGGCAATCTTTATAGTGTAAAGCTTCCATCTTCGTTCCCTGTCGTTCTCTCTGGCAATTGGTCTGAAGATGAAGGTCTACTTGTTGTTCGAGGTGATCAGTCTCTTCGTCAAGAAATTACTAGCACGTCTCCAAGCGAAGGATCTTCGATCATTGGTAACGCAACTGTATCTGTATCTTCAGTTGCGGACATAAAAAATCAGACTAAAAGACCGGATCTTAAGCTCTCTTTGTCTTCATATCATCCGCTTGGAACGTCTGGTGGCGGGGAATTTATTTGGAGCCCATCTACTCCTAAATCTCAGCATGACGGAGGAACCATCTTTAGCCCGACTGTCCCATGGGATGGTTCGCAGGCCACGCTTTCAGACTACTTGGATGGCGATGGAGAAACAGACCCTTCTGGGGCTGGATGCTGGCTGAGGATTTTTGATGATGTGAAGCTGGAGTATTTTGGGGGGGTGGTTAGTGAGACCATAGACTCATCAGCATCGTATTTGGCAGCTCTTAGGTACTGCATTTCAAATAACAAAGAACTTCATCTTCCTGATGGGGTTATTCGAGTAAATTCAACAGCCGTAATTAACGGGTCTACCACTCTGTTTTCGTCTGTAAAAATTAGAGGTACGTTTAAGACGAGCGGTGTTGCTGCAGGTTATGTTGTGAGTCGAGTTGGTAGCCTGATATATACTGACGGAAACAGCGCTCTTGATATTTCGTTCAATGACTTCAGGAATGAAAACTTCGATATCCGTGGCGTAGCATTCGTTGATACATCATTCTATCCGGCTGGAACTCCTGCGAGCCCAAATCCTGCAATAATTATCAGAAAGGGTAATCCTGACGGTAGCAGTAATAGATATATAACTGGCAACGTACTTGAGGATGTTGCTTTCGTTAGTTACCAAGATGCTGTTAAGACTGTTGGTATTGCTACAGGTCTTCCGGCATACAACTATGTAGGACCAACCTCGTTTAATCGCGTGTATTTCTACAGGTGTGGCACTGTAATGCACCTGCAAGACTGCACGTACAATCACCTGTTCATGAATGAGTGCCTGCTTTTTGATATCTCATCGCAAGCCATCTTTCTTAGTAAGACTGATAGCGGTACTGGCGGTAACGTTGTAGTCACTTTCAGTAACTGCGTATTCGAATCTATTTGGGGCATTATGAATACGGCTAACGGATTGACGTCTTCATCTATGCGCAATACGGCAGTTTTCAACTCATGCAATAGAGAGTTCTGCGGGCTTTATGGGCCTACTGGTGGTGGCGGTAACTTTGCAGGAAGCCCGCTGGGGTATATCGGGCATACTGATGTAATGATCAATGGCAACTGGGAGAGAGGGCAAGCGTTTGGTGAAACGACTTTGCCAGCGATTGACCCTGGAGCAGTTGTTTTTGCAAGCAGATATGTAGATGTCATTATGAATGGCGGCCAAGTTGGTTCGCCAGAATATGTCAACGTCGTTGATGTTAGCGGAACGATTCCAGCATCTGGCAGCCTGACAAAAACTTTCAATGTTAGCGGTTCGTTTGTATTGAATGCTGACGTCGCCTATGACGACGGGTTTGGCGGGCACCAGAACGTTGTTGCCTACGGCAACCCGACTGGCTCAAAGGCTCGGGACGTGACGGGTACGATCATTTCTGCTGGCCTGACTGCAACCTACGGCGATGGCCCATCTGGCGCGGCGTTCACGGTAACGTTCAACAACGGTACCGCGTCGCCGATCAATGTGAAGATCCGAGTCACGAACAAAGCCGGCCTGATCGTTACTGTTTCATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0b2c4cc688fe2034005872130aaec57d4eb23db6020521ecb04a77b5021a32bc
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7030
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of the Pseudomonas phage YMC11/07/P54_PAE_BP Jeon,J., Yong,D. and Lee,K. 2012-12-15 — GenBank