Protein

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Genbank accession
XJP14187.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MIEETDTKQFVTQAEKDKWNSINDSKGCVKSVNNKTGDVMLNASDVGAEPSINKKTGFNLDKSDSVTSTSSSTLATSKAVKSAYDKALQAFQLVSDGKLKIATAITDKGITTSSSDTFQKMADNINNISINGDLRKTYLKPFSKLTGNIRYINSSRELMYIIPGAHKLDIYNFNGVKIKSMEYPYHDNKINNSVFGVDSFIYGGYYSNYNWFICSYNGTRLREIDGSNWGFPGQYIVPLNKNGDYMYEGDFYDVSGTKKQNMLSEGNQEVVLALTDEIIIHIYKSRNNILVSYKKEDVNEIKELARWEGMEIKDICFS
Physico‐chemical
properties
protein length:318 AA
molecular weight: 35780,79180 Da
isoelectric point:6,35457
aromaticity:0,10692
hydropathy:-0,51887

Domains

Domains [InterPro]
IPR005068
STR
63–88
IPR005068
DC_1978
STR
70–284
DC_1978
XJP14187.1
1 318
Architecture
STR
STR 63-284 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XJP14187.1
1 318
Domain Start End Length (AA) Confidence
N-terminal 1 118 118 0,8289
Central domain 119 307 190 0,7621
C-terminal 308 318 10 0,1398
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-118
Central
119-307
C-terminal
308-318

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage Makh22
[NCBI] 		3367538 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium sp.
[NCBI] 		1506 cellular organisms > Bacteria > Bacillati > Bacillota > Clostridia > Eubacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XJP14187.1 [NCBI]
Genbank nucleotide accession
PQ069209.1 [NCBI]
CDS location
range 12702 -> 13658
strand +
CDS
ATGATTGAGGAGACTGATACAAAGCAATTTGTAACCCAAGCAGAAAAAGATAAATGGAATAGCATTAATGACAGTAAAGGATGTGTTAAATCCGTAAACAACAAAACAGGTGATGTGATGCTTAATGCCTCTGATGTGGGTGCAGAACCTAGCATAAATAAGAAAACAGGGTTTAACCTTGATAAAAGTGATAGTGTTACTTCTACATCATCTTCTACGTTAGCAACAAGTAAGGCTGTCAAATCCGCATATGATAAAGCACTACAGGCTTTTCAATTAGTCAGTGATGGAAAATTAAAAATTGCTACTGCAATCACTGACAAAGGAATTACAACGAGCAGTAGTGATACGTTTCAGAAGATGGCTGATAATATAAATAATATAAGTATAAATGGAGACTTAAGGAAAACATATCTAAAACCATTTAGTAAGCTAACCGGTAATATTCGATACATAAATTCATCCAGAGAACTTATGTATATTATACCAGGAGCACATAAATTAGATATATATAACTTTAATGGGGTAAAGATAAAAAGTATGGAATATCCATATCACGATAATAAAATAAACAACAGTGTATTCGGGGTAGATTCATTTATATATGGTGGATATTATAGTAACTACAATTGGTTTATTTGTAGTTATAATGGTACAAGGTTGAGGGAAATTGATGGAAGCAATTGGGGATTTCCTGGACAATATATTGTACCACTAAACAAGAATGGTGATTATATGTATGAAGGAGATTTTTATGATGTGAGTGGAACTAAAAAACAAAATATGTTAAGCGAGGGCAATCAGGAGGTAGTTCTTGCATTAACAGATGAAATTATTATACATATTTATAAATCTAGGAATAATATCCTTGTTTCATACAAAAAAGAAGATGTAAATGAAATAAAAGAACTGGCAAGGTGGGAAGGCATGGAAATTAAAGATATATGTTTTAGTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
1b9f8ab54798e42f1ba1af1b2b890d20ede9721edd1031a03e855e3c15e0170e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6595
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Sequence-independent single-primer amplification and Oxford Nanopore MinION sequencing decipher the viral genomic diversity in South African domestic chickens Chauhan,R.P., Fogel,R. and Limson,J. 2023-11-18 — GenBank