Protein

View in Explore
Genbank accession
AFB15315.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MALTRVSDNQIAESTSAVLTTLSFLNTDSVLRLPSGNTDQQPGSPATGTLRFNTENDNAEIYVADADGQGNPGWTEVAGGGPSVGNDAMIRTNGVHLTENTTVGPIANGDEQFTYGLHMGDMIIDQGITLTIESGAGLQLLAVDEPIVYESRLFSRGSLIQIAYDQSTVAQTITNTDNIGDFGTYLEGLQILDFRPRRSDSIIVLEASISHSNSHVVSFGFLVNNVPVASLSSNSNTSGSNVTAYDGGNNPNSISVTNWKISPTNPGAGVSMDIRVAGTASWLGAQTSYPLYINNRQNGDTRSISSITAYEIAQ
Physico‐chemical
properties
protein length:314 AA
molecular weight: 33187,00000 Da
isoelectric point:4,29603
aromaticity:0,06369
hydropathy:-0,19873

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Synechococcus phage S-RIM8 A.HR5
[NCBI] 		869726 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AFB15315.1 [NCBI]
Genbank nucleotide accession
HQ317385.1 [NCBI]
CDS location
range 26947 -> 27891
strand +
CDS
ATGGCACTTACTAGAGTTAGTGATAACCAGATTGCTGAAAGTACCAGCGCAGTTTTAACAACACTGTCATTCTTGAACACTGACAGTGTTCTTAGACTTCCAAGTGGTAATACTGATCAGCAACCAGGTTCGCCTGCTACAGGAACACTTAGATTCAATACTGAAAATGATAACGCTGAAATCTACGTTGCTGATGCTGACGGACAGGGTAATCCTGGTTGGACAGAAGTTGCTGGAGGTGGACCTTCAGTAGGAAACGATGCCATGATTAGAACTAATGGCGTTCATCTTACTGAAAATACTACTGTTGGACCAATTGCAAATGGTGATGAACAATTCACCTATGGTTTGCATATGGGTGACATGATTATTGACCAAGGTATTACTTTAACCATTGAAAGTGGTGCAGGTCTTCAACTACTTGCTGTTGATGAACCTATCGTGTATGAGAGCAGATTATTCTCAAGGGGTAGTTTGATTCAAATAGCATATGACCAAAGCACAGTAGCACAAACCATTACTAATACTGATAATATTGGTGATTTTGGAACATATCTTGAGGGACTGCAAATCTTAGATTTCCGTCCAAGAAGAAGTGATTCTATTATTGTTTTAGAAGCGAGTATTTCTCACTCAAACTCACATGTCGTTAGTTTTGGTTTCCTGGTCAATAATGTCCCTGTTGCTAGTTTAAGTAGTAACTCCAACACATCGGGTTCAAACGTAACAGCATACGATGGTGGTAATAATCCAAATTCAATATCTGTTACTAATTGGAAGATTTCACCAACAAATCCTGGTGCTGGTGTGAGCATGGATATTAGGGTAGCAGGTACTGCATCATGGCTTGGTGCCCAAACTTCCTATCCTTTATACATCAACAATAGGCAGAATGGTGATACGAGGTCTATTAGTTCTATCACTGCTTACGAAATTGCACAATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
dc3e50d16bc27fa58e895da6a536c85d0116f423d6b32f3037368260902c0ea1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6548
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Synechococcus phage S-RIM8 isolate A.HR5 Henn,M.R., Martiny,J., Weihe,C., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Fitzgerald,M.F., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Neiman,D., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank