Protein

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Genbank accession
WPK20162.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,76
Protein sequence
MAVFSNLEGTMKKSFILGKNGAQITTNGSVVQIQNYSGTQLLPISAGEPTANTHLVTLGYLNAHSGGGSSGILRGTTAPSDSIGLDGDVYFLVDSTNVLQIYINHLKVAHLGLIAHM
Physico‐chemical
properties
protein length:117 AA
molecular weight: 12212,73370 Da
isoelectric point:6,48052
aromaticity:0,05983
hydropathy:0,18291

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK20162.1
1 117
Domain Start End Length (AA) Confidence
N-terminal 1 53 53 0,5116
Central domain 54 106 54 0,0041
C-terminal 107 117 10 0,9972
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-53
Central
54-106
C-terminal
107-117

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage SD-1_S14
[NCBI] 		3096172 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella typhimurium
[NCBI] 		90371 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK20162.1 [NCBI]
Genbank nucleotide accession
OR699183 [NCBI]
CDS location
range 309813 -> 310166
strand +
CDS
ATGGCAGTTTTTTCTAATTTAGAAGGAACCATGAAGAAGTCCTTCATTCTTGGGAAGAATGGTGCACAGATTACCACAAATGGTAGTGTTGTGCAAATTCAAAACTACTCAGGAACACAACTTCTTCCAATTTCAGCAGGTGAACCAACTGCAAACACACACTTGGTTACATTGGGATATTTAAACGCACACAGTGGTGGTGGTAGTTCTGGTATCTTACGTGGAACAACAGCACCATCCGATTCGATCGGTCTAGATGGTGACGTTTACTTTTTGGTTGATAGTACTAATGTTCTTCAAATTTATATTAACCATTTAAAGGTAGCTCACCTGGGACTGATAGCTCATATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
96ca8418b2841c9b732239b9d99ed77504370072df982fb42105cb230e1f6ac6
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6721
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence a group of lytic Salmonella phages Dlamini,S.B., Montso,P.K., Ateba,C.N., Mnisi,M.C. and Mlambo,V. 2023-09 — GenBank