Protein

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Genbank accession
AXF39338.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,90
Protein sequence
MAWTATGGNLKGPKGDPGTNGAKGDAGTSLHVANIDISSNSDVATSSLSPSAPMTVGDLISDNNGDLFTVTSIVNETTVHVSNVISGVSFKGPQGERGADGAPGKDGTGVTILGSADSPEALKAAHSTGKAGDAYLIGGHLYVWDMVGAGWKDVGTIQGPKGDKGDPGTNGKDGKDGKDGLGWTYGHGVPSSTGQPVGSLYLDLDTGNVYAFNA
Physico‐chemical
properties
protein length:214 AA
molecular weight: 21317,02450 Da
isoelectric point:4,76205
aromaticity:0,05607
hydropathy:-0,34159

Domains

Domains [InterPro]
DC_1340
STR
3–90
DC_1340
DC_1340
STR
70–213
DC_1340
AXF39338.1
1 214
Architecture
STR
STR 3-213 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bifidobacterium phage PMBT6
[NCBI] 		2576879 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Bifidobacterium thermophilum
[NCBI] 		33905 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Bifidobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AXF39338.1 [NCBI]
Genbank nucleotide accession
MH444512.1 [NCBI]
CDS location
range 33001 -> 33645
strand +
CDS
ATGGCATGGACTGCAACAGGCGGCAACCTTAAAGGGCCTAAGGGCGATCCGGGCACGAACGGTGCGAAGGGAGATGCGGGCACGAGCCTGCACGTCGCCAATATTGATATTTCAAGCAACAGTGATGTGGCAACGAGCTCTCTTTCGCCATCCGCGCCGATGACGGTCGGAGATCTGATCTCCGACAACAACGGAGATTTGTTCACGGTCACTTCCATCGTCAATGAGACGACCGTCCACGTGTCCAACGTCATCAGCGGCGTAAGCTTTAAGGGGCCGCAGGGTGAGCGAGGCGCGGACGGAGCGCCCGGCAAGGACGGTACCGGCGTCACCATTCTCGGCTCGGCCGATTCCCCCGAAGCGTTGAAAGCCGCACATTCGACCGGCAAGGCAGGCGACGCCTATCTTATCGGAGGCCACCTGTACGTGTGGGATATGGTCGGCGCGGGCTGGAAGGACGTCGGCACCATCCAGGGGCCGAAGGGCGATAAGGGCGACCCCGGCACTAATGGCAAGGACGGCAAGGACGGCAAGGACGGTCTCGGCTGGACCTACGGTCACGGCGTGCCGTCATCGACCGGCCAGCCGGTCGGCTCACTCTATCTTGACCTCGATACCGGCAACGTGTACGCCTTCAACGCCTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
2905fdfd84a13ad5df18dda3bb5a3b93fda8837caa914ff3001abb3d93d6736e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8558
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genome analysis of the temperate bacteriophage PMBT6 residing in the genome of Bifidobacterium thermophilum MBT94004 Sprotte,S., Bockelmann,W., Brinks,E., Schleifenbaum,P., Cho,G.-S., Fiedler,G., Heller,K.J., Franz,C.M.A.P. and Neve,H. 2020 — GenBank