Protein

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Genbank accession
QBJ03766.1 [GenBank]
Protein name
minor structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSGVNGLDTKYVICDQKGKVISALDCAGSTPFFDDTITNAIATNSDQSSDGTVNFPDNFLASRDLNANSKEWESTLEISVPISSPISKRCVLGNILMDYDEVTNKWYAYKIWSESNDHTDMSGHQVNKLQCINLLNWRLAKYIPTVKQISNINGKTAFQMLLAPSGWTLDWKAKSQMFGNIDFDGQNNAQSYLQTMLQTYDVEIEAYVKVDGKGITRKICTVVDKLGSKTPVQSFYYGRNITGITKTTIDSNLITKLWVRDANGKDISDINGGNGFLVDNEANDLYNGGNDDYLEGVVVSQTIKNHAALLTWGHQVLKVYNHPRANYEITVPSNYNIKLGDTVSVVDYTMTPAITITARAIQVEKSKANRNFKITFGEFIPIKVVTPNAIQALRNELNNNIDNLITQAKNDITLLTSTISTPDGTSFRQNEEYKRAIGKVFINSVNVTNYCTPQAFLWSLNNPNGTPNVDWINRWDNGAKGGYLQGVDEATFGDLQLNVDLDAISDTPQITIDEKPNNSWISSYNIQKIRYDASTKALYFIEGNKLHRTTDFGKTVTTMTINNIYTYDFATDGFTIYMMSETNGIVSFTFTNGSMIDITKVTAQKMALSQSYHFDYDASNNMAALISGKQILIVQDNSDDTNPFYYISDYSKLGISGNVSDFVLKYPNMYMVLDTHKVVGYNVINESPIFSHSFDYKSGMPTGNEVSISQDSNHFYIATNTTDSSASTEIVDVPAILRADPTAITEDPKVDLVPNAVEQAGFSSLNSKLAAIQNSGTVSFGYITDTHVSGYGNDTAHTVPALRHIKAFSYFAKNNSSVKMTIHNGDLDDGEAPIQDTMNDVDMAIEALQLSGKPFAVSQGNHDDNSGYARDFSGRLVSQVFDPQKSYEHRINKFSEYITLNKYDRTNMYGTYALTDKIDMIFLNSFDLPYNYAPDTVEDWVAHQRSCFMQQQISWLITTLQNIPDDHQVLIVTHCPIRNGAISNSSFVIKQRNGNLISGILEAFQNGTKFSQRGYTWSATYKTPLNTGVFTAEANVDFSGKPTKRIIAVLSGHTHEDKDNFHSNVLYTQTLDSLPGRCPTISRVMGESSEDAWDIITIDPSARKIYFSRYGAGVDREYNY
Physico‐chemical
properties
protein length:1120 AA
molecular weight: 124797,81600 Da
isoelectric point:5,16544
aromaticity:0,10268
hydropathy:-0,36696

Domains

Domains [InterPro]
DC_1956
STR
3–648
DC_1956 IPR029052
IPR007119
Unmapped
65–371
IPR007119 IPR029052
IPR010572
ENZ
153–379
IPR010572 IPR004843
QBJ03766.1
1 1120
Architecture
STR
STR
STR 3-648 | STR 776-1110 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QBJ03766.1
1 1120
Domain Start End Length (AA) Confidence
N-terminal 1 839 839 0,9312
Central domain 840 1046 208 0,3411
C-terminal 1047 1120 73 0,0809
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-839
Central
840-1046
C-terminal
1047-1120

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage ATCCB
[NCBI] 		2510944 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Lactobacillus brevis
[NCBI] 		1580 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QBJ03766.1 [NCBI]
Genbank nucleotide accession
MK504445 [NCBI]
CDS location
range 52469 -> 55831
strand -
CDS
ATGAGTGGAGTAAATGGACTAGACACGAAATATGTGATTTGCGACCAAAAAGGTAAGGTTATTTCAGCTCTCGATTGTGCTGGATCAACACCATTTTTTGATGATACAATTACAAATGCAATTGCGACAAATAGTGACCAATCGTCTGATGGAACAGTTAATTTCCCTGATAATTTTCTAGCAAGCCGTGACTTAAATGCAAACTCAAAAGAGTGGGAAAGTACGCTTGAAATTAGTGTGCCAATTAGTTCTCCTATTTCTAAGCGTTGTGTTTTAGGAAATATTTTAATGGACTATGATGAAGTTACTAATAAGTGGTATGCTTATAAAATATGGAGTGAAAGTAATGACCACACTGATATGTCAGGGCATCAAGTAAATAAATTACAATGCATTAATTTATTAAATTGGAGATTAGCAAAATATATTCCAACAGTAAAACAAATTAGTAATATCAATGGTAAGACGGCATTCCAAATGCTGTTAGCTCCATCTGGTTGGACATTAGATTGGAAAGCAAAATCGCAAATGTTCGGTAATATCGATTTTGATGGACAAAATAATGCGCAATCTTATTTACAAACAATGTTACAAACCTATGATGTTGAAATTGAAGCATATGTTAAGGTTGATGGAAAAGGCATTACACGTAAGATCTGTACAGTTGTTGATAAACTTGGTAGTAAGACACCTGTGCAAAGTTTTTACTATGGTCGAAATATCACAGGAATTACTAAAACAACTATTGATAGTAATTTAATTACTAAGTTATGGGTTCGTGATGCAAATGGTAAAGATATTTCTGATATTAATGGTGGAAATGGATTTTTAGTTGATAATGAAGCAAATGATTTGTACAATGGTGGAAATGATGATTATCTTGAGGGAGTTGTTGTTTCACAAACAATTAAAAATCACGCGGCCTTACTAACGTGGGGTCATCAAGTTCTAAAAGTTTATAATCATCCTCGGGCAAATTACGAAATTACAGTGCCATCAAATTATAATATTAAATTGGGTGATACAGTTTCTGTTGTTGATTACACAATGACTCCAGCAATTACGATTACGGCTCGTGCTATTCAAGTTGAAAAAAGTAAAGCAAATCGTAATTTTAAAATTACTTTTGGTGAATTTATACCTATTAAAGTTGTTACACCAAATGCAATTCAAGCACTGCGAAATGAATTAAATAACAATATTGACAATTTAATTACTCAAGCTAAAAATGATATTACTTTGTTAACATCAACTATTTCAACACCTGACGGAACTTCATTTAGACAAAATGAAGAATATAAGCGGGCAATTGGTAAAGTTTTCATTAATTCTGTAAATGTTACTAATTATTGTACTCCTCAAGCATTTTTGTGGTCACTAAATAACCCAAATGGAACTCCAAACGTCGATTGGATAAATAGATGGGATAATGGTGCAAAAGGTGGATATTTACAAGGTGTTGATGAAGCAACTTTTGGTGATTTACAACTAAATGTTGATTTGGATGCAATTTCAGATACTCCACAAATTACGATTGATGAAAAACCAAACAATTCTTGGATAAGTTCTTACAATATTCAAAAAATAAGATATGATGCATCTACAAAAGCCTTGTATTTCATTGAAGGAAATAAATTGCACCGCACTACAGATTTTGGTAAAACAGTAACAACGATGACGATTAATAATATTTACACTTATGATTTTGCCACTGATGGTTTTACTATTTATATGATGAGTGAAACAAACGGTATTGTTTCATTTACGTTCACAAATGGTTCAATGATTGATATTACGAAAGTTACAGCACAAAAAATGGCCTTATCTCAATCATACCATTTTGATTATGATGCATCGAATAATATGGCTGCATTAATTTCTGGAAAACAAATCCTTATCGTTCAAGATAATTCAGATGATACAAATCCATTTTACTATATTTCTGATTATAGCAAATTAGGAATTTCTGGAAATGTTAGCGATTTTGTTTTAAAATATCCCAATATGTATATGGTATTAGATACTCATAAAGTTGTTGGATATAATGTAATTAATGAATCTCCTATATTTTCACATTCTTTTGATTATAAATCAGGCATGCCAACCGGTAATGAAGTAAGTATTTCTCAAGATTCTAATCATTTTTATATTGCTACAAACACAACTGATTCTAGTGCGTCAACAGAAATTGTCGATGTACCAGCAATTTTAAGAGCTGACCCAACTGCAATTACTGAAGACCCTAAGGTTGATTTAGTTCCAAATGCAGTTGAACAAGCCGGTTTTTCATCACTAAATTCTAAATTAGCCGCAATTCAAAACAGTGGAACAGTTAGTTTTGGATATATTACCGATACTCATGTTTCGGGATATGGAAATGATACTGCGCACACGGTACCGGCACTTCGTCATATTAAAGCATTTTCTTATTTTGCTAAAAATAATAGTTCTGTGAAAATGACGATTCATAATGGCGATTTAGATGATGGTGAAGCACCTATTCAAGATACAATGAATGATGTTGATATGGCAATTGAAGCCTTACAATTAAGTGGAAAACCTTTTGCTGTTTCTCAAGGGAATCATGATGATAATTCCGGTTATGCACGAGATTTTAGTGGTAGATTAGTTTCACAAGTGTTTGACCCACAAAAATCTTATGAACATCGTATTAATAAGTTTAGTGAATATATTACACTAAATAAATACGATAGAACAAATATGTATGGAACTTATGCATTAACAGATAAAATTGATATGATTTTCTTAAACAGTTTTGATTTGCCATATAATTATGCACCTGATACAGTTGAAGATTGGGTTGCTCACCAACGTTCTTGTTTTATGCAACAACAAATTAGTTGGCTAATTACTACATTACAAAATATTCCAGACGACCATCAAGTCTTAATTGTTACACATTGTCCAATTCGTAATGGAGCAATTTCTAATAGCTCGTTTGTTATTAAGCAACGCAATGGCAATTTAATTTCTGGAATTTTGGAAGCATTTCAAAACGGAACTAAATTTAGTCAACGTGGATATACTTGGTCAGCAACTTATAAAACCCCGTTAAACACAGGTGTCTTTACTGCTGAAGCAAACGTTGATTTTTCTGGAAAACCAACTAAAAGAATTATTGCTGTTTTAAGTGGGCACACTCATGAAGACAAAGATAATTTTCACAGCAATGTTTTATACACACAAACATTGGATAGCTTACCAGGACGTTGCCCAACTATTTCTCGAGTTATGGGGGAAAGCTCAGAAGATGCGTGGGATATTATTACAATTGACCCATCAGCAAGAAAAATTTATTTTAGTCGATATGGTGCTGGTGTAGATAGAGAATATAACTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
9107e8b522143d87877970ece1c25ada0cf7e04b9468bde230c6593b65bd2b4d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2575
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation of virulent Lactobacillus brevis phages Feyereisen,M., Mahony,J., O'Sullivan,T. and van Sinderen,D. 2019-04-26 — GenBank