Protein

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Genbank accession
UMO77179.1 [GenBank]
Protein name
pectate lyase
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAYLEGTCTTGGVATPGVKVYAFRTGQWGAPASGISDFEGKWRVEGLVDDVLYDVAFVHPDGQWEGKMSSRRMPIFDPFADPYWEDTTLLVHFDDISGQVPTNERGVTGFRIGGTGALIADTAPTPKFGTGALNLNNGASAAGFWFGSTNGTGAVGSPVYISTTDNFTVEGWFYCRSGVATNTYRDICILGSTDKGIVINGSSQIVYYDGGIKIQGPSMTDLYDKWVWLVVQRENGVTGMWLDGNRIGTFGDTAEKNSFRLGSNTGNAEQFFGGFDEWRHTRAARYPGSPATINVPTAPFTPGNPIRSDSFTVDRLWNYEQTIGSGTWSISAGRLNVNHPAGDTFFIRRDFASQNLFCEAEIFQAQDSGFVWRYIDTNNFYIMSLMDDQGPLEPNTLKMYKRIGGTYTQIGSTTPITLTRGTANKVRMEMTGSTITVLINGTPVGSFTDTSIAVSGRMGFKAAAGSGYNGQLIVDNFKWDTLL
Physico‐chemical
properties
protein length:483 AA
molecular weight: 52554,01170 Da
isoelectric point:5,02146
aromaticity:0,12422
hydropathy:-0,23416

Domains

Domains [InterPro]
DC_0826
ATT
1–135
DC_0826 IPR013320 DC_0966
G3DSA:2.60.120.560
RBD
316–478
G3DSA:2.60.120.560
IPR010496
Unmapped
325–454
IPR010496
UMO77179.1
1 483
Architecture
ATT
STR
RBD
ATT 1-135 | STR 136-279 | RBD 300-483
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UMO77179.1
1 483
Domain Start End Length (AA) Confidence
N-terminal 1 105 105 0,7668
Central domain 106 307 203 0,5699
C-terminal 308 483 175 0,9454
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-105
Central
106-307
C-terminal
308-483

Taxonomy

  Name Taxonomy ID Lineage
Phage Stenotrophomonas maltophilia phage vB_SmaM_Ps15
[NCBI] 		3071007 Uroviricota > Caudoviricetes > Menderavirus >
Host Stenotrophomonas maltophilia
[NCBI] 		40324 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Lysobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UMO77179.1 [NCBI]
Genbank nucleotide accession
OL702939 [NCBI]
CDS location
range 16884 -> 18335
strand +
CDS
ATGGCATATCTAGAAGGCACATGCACAACAGGTGGCGTCGCCACCCCAGGAGTCAAGGTTTACGCATTCCGCACCGGACAATGGGGCGCGCCTGCATCAGGCATTAGCGACTTTGAAGGCAAGTGGCGTGTTGAAGGCTTGGTAGATGACGTTCTGTATGACGTCGCTTTCGTGCATCCGGACGGGCAATGGGAAGGAAAGATGTCAAGCCGACGCATGCCTATCTTTGATCCGTTTGCCGATCCATACTGGGAAGACACAACTCTACTTGTTCACTTCGACGACATCAGCGGGCAGGTTCCAACAAACGAGCGTGGTGTCACAGGATTCCGAATTGGTGGAACCGGGGCGTTGATCGCAGACACTGCACCGACTCCCAAGTTTGGTACAGGTGCCTTGAACCTGAACAATGGCGCCAGCGCCGCTGGATTCTGGTTTGGATCAACAAACGGCACGGGCGCCGTTGGCAGTCCGGTATACATTTCAACTACAGACAATTTCACTGTAGAGGGGTGGTTCTATTGCCGAAGCGGTGTCGCAACCAATACCTACCGAGACATTTGCATCTTGGGTTCAACTGACAAAGGTATCGTCATCAACGGCAGTAGCCAGATCGTCTATTACGACGGCGGTATCAAGATCCAAGGCCCAAGCATGACTGATCTATACGATAAATGGGTATGGCTTGTCGTCCAAAGGGAAAACGGCGTAACTGGTATGTGGTTGGACGGAAATAGGATCGGCACCTTCGGGGATACAGCCGAGAAGAATTCTTTCCGGTTGGGATCGAACACTGGCAATGCTGAGCAATTCTTTGGCGGTTTTGACGAATGGCGCCACACAAGAGCAGCCAGATATCCAGGCTCACCAGCGACCATCAATGTTCCAACTGCACCTTTCACTCCGGGAAACCCGATCCGGTCAGACAGTTTCACGGTAGATAGACTCTGGAACTACGAACAGACTATCGGCTCAGGTACTTGGTCGATCTCAGCCGGGCGTCTTAACGTAAACCACCCGGCTGGCGATACGTTCTTCATCAGGCGTGACTTCGCCTCGCAGAACCTTTTCTGCGAGGCTGAGATCTTCCAAGCTCAAGACTCAGGATTTGTTTGGCGGTACATTGACACAAACAACTTTTACATCATGTCCCTGATGGATGATCAGGGACCGTTGGAACCTAATACGCTGAAGATGTATAAGCGAATTGGTGGCACATACACACAGATCGGATCCACAACGCCAATCACCTTGACTCGCGGAACAGCCAACAAAGTGCGGATGGAGATGACGGGTTCTACTATCACTGTTCTGATCAACGGTACGCCAGTCGGATCATTCACTGATACATCAATCGCAGTCTCTGGTCGAATGGGCTTCAAGGCTGCTGCAGGTTCAGGCTATAACGGGCAGCTGATCGTTGATAACTTCAAGTGGGACACACTCCTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4c72dd5955d01684e211842c2a5082973c37dd6970029857ce452cf64ee6fedf
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8421
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophage vB_SmaM_Ps15 infective to Stenotrophomonas maltophila clinical ocular isolates Damnjanovic,D., Vazquez-Campos,X., Elliott,L., Willcox,M. and Bridge,W.J. 2020-06-11 — GenBank