Protein

View in Explore
Genbank accession
YP_009843778.1 [GenBank]
Protein name
structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MTDFAKKPVAFDDKQSSVLKCPEEIYARGFFPPIQLPDGRVIKGDVLPSGWFNDLMSRAMQSNINELPVAAVPSSFGWNEAASGVTDWFAIHVGPISIEIGSIRETTNSSPTLVPKTPFIGNPQVYLTDISDPTVANGKMVGWTGVGGTLPQKPLAFCSLNRAEGFVAPGTFYYILVGERAVTGQTPGGKPFCSEPQTFLDGQTSFSAPTNDQVSFGFVPPVMDTTGLREADTLPANVLNYLFHELTANIGSVYWEMKNDGGNSGLKHYRIILGDMMIQSFGTAIPAGGNGGTDSVTISYAWPFKTNCAAAEMMAIGGVQNTGVPSYAMANCISYQNMQVANRQVNVANSAKSVAGTMAFLCFGPAPDNLARPKSKVPGIDGFAMQDKTYVDGQPNKVKPAADRMAAGFFPSRKMNGGAVEHGDFVTANEINWLFNDAYKLKANTKIATGTIAADAAKKIAGGHWITIGDLLIEWFQVSGTTAADWPSNVRQQLFAMPFRPGSSPCVWLRDTSAAETGYVMAGTIGEAFLTNEWARFTGIQINTGNQAWPGNFCVLAIGRKP
Physico‐chemical
properties
protein length:562 AA
molecular weight: 60193,67200 Da
isoelectric point:5,84114
aromaticity:0,10320
hydropathy:-0,09021

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009843778.1
1 562
Domain Start End Length (AA) Confidence
N-terminal 1 415 415 0,2602
Central domain 416 551 137 0,0018
C-terminal 552 562 10 0,9980
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-415
Central
416-551
C-terminal
552-562

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_LIET2
[NCBI] 		2508071 Uroviricota > Caudoviricetes > Lietduovirus >
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009843778.1 [NCBI]
Genbank nucleotide accession
NC_048751 [NCBI]
CDS location
range 52170 -> 53858
strand +
CDS
ATGACAGACTTTGCTAAAAAGCCAGTGGCTTTCGATGACAAACAGTCATCAGTTTTAAAATGCCCTGAAGAAATTTATGCGCGCGGGTTCTTCCCGCCGATCCAGTTACCTGATGGTCGCGTCATTAAAGGCGACGTGTTGCCATCAGGCTGGTTCAACGATCTGATGTCGCGCGCCATGCAATCGAACATCAACGAATTGCCCGTGGCCGCCGTGCCAAGTAGCTTTGGCTGGAATGAAGCGGCAAGCGGCGTTACTGATTGGTTTGCGATCCACGTCGGCCCCATATCGATTGAAATCGGCTCGATCAGGGAAACGACAAATAGTTCGCCCACGTTAGTTCCGAAAACCCCTTTCATCGGGAACCCGCAAGTTTACTTAACCGACATTTCAGACCCTACTGTCGCAAACGGTAAAATGGTCGGGTGGACTGGTGTCGGCGGGACGCTGCCACAAAAACCCCTGGCATTTTGCAGCCTGAACAGAGCGGAAGGCTTTGTCGCTCCGGGAACGTTTTATTACATTCTGGTGGGCGAACGTGCGGTCACCGGTCAGACGCCGGGCGGAAAACCGTTCTGTAGTGAACCGCAAACCTTCCTTGATGGGCAGACCAGCTTTTCAGCGCCGACCAATGACCAGGTCTCATTCGGATTCGTGCCGCCAGTGATGGACACTACCGGACTACGTGAAGCCGATACCCTGCCCGCGAACGTGCTGAATTATCTTTTCCATGAACTGACCGCGAACATCGGTTCAGTCTATTGGGAAATGAAAAACGATGGCGGAAATTCAGGGCTGAAGCACTACCGGATCATTCTGGGCGATATGATGATCCAGTCATTCGGTACTGCCATCCCCGCCGGTGGCAATGGCGGAACAGATAGCGTAACAATTAGCTATGCCTGGCCGTTTAAAACAAACTGCGCCGCAGCTGAAATGATGGCGATTGGTGGCGTGCAGAATACCGGCGTTCCCAGCTATGCGATGGCTAACTGTATCAGCTATCAGAATATGCAGGTGGCAAACCGCCAGGTGAACGTCGCTAACTCTGCGAAAAGCGTTGCCGGGACCATGGCTTTTTTATGCTTCGGTCCTGCACCTGACAATCTGGCCCGGCCAAAATCGAAAGTCCCAGGGATCGATGGTTTCGCCATGCAGGATAAAACCTATGTGGACGGCCAGCCAAACAAAGTTAAACCGGCAGCCGACCGCATGGCCGCAGGCTTTTTCCCGTCTCGCAAGATGAACGGCGGCGCGGTTGAACATGGCGATTTTGTCACGGCCAATGAAATTAACTGGCTGTTCAATGACGCCTATAAGCTGAAGGCGAACACGAAGATCGCAACCGGCACTATTGCCGCTGACGCCGCAAAAAAAATAGCTGGTGGTCACTGGATTACTATCGGCGACCTGCTGATCGAGTGGTTCCAGGTTTCAGGGACAACTGCGGCAGACTGGCCCTCTAACGTTCGCCAGCAGTTATTCGCCATGCCGTTCAGGCCTGGTTCATCACCCTGCGTCTGGCTGCGGGATACCAGCGCAGCTGAAACCGGATATGTGATGGCCGGGACGATTGGCGAAGCGTTCCTAACGAACGAATGGGCGCGCTTTACCGGCATTCAGATAAACACAGGGAACCAGGCATGGCCGGGTAATTTCTGCGTGTTGGCGATTGGCCGAAAACCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
62eb70d34522980115b86c08b14d1645576b2eaf95b4d565b109eea1db88c4b3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,5500
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea phage vB_PagM_LIET2 Truncaite,L., Simoliuniene,M., Kazlauskas,D., Meskys,R. and Simoliunas,E. 2011-08-10 — GenBank