Protein

View in Explore
Genbank accession
XOD48578.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 0,94
TSP
Evidence RBPdetect
Probability 0,51
TF
Evidence RBPdetect2
Probability 0,88
Protein sequence
MTESLNSRVAKFDEIVTNVDTWVKGGSADTVDFGGGPVDSPAKLIEGQRTDIAAAAAALISQKDEQINQQANGVLAQANAAASNANGSAGAASASAASAAASAANSAASAADAAASSAQKFVTSAGAANQKPNTSYTYINPLSRVCTITGGGDGSNFQMIGYGHNRQKFLGAATTGVWNYLPVNGIANLNFYRIAGDGTRTKLTYTSGTPTGNQWSGTVGASSVTWTLGTALDTLSKLFVEDPFATIPTTGTQPDYSWIGGGYDNVVDRGVMQHVTGAHNRVLDGDHTTMLGGSYHTNDGGSYNAFCGGTDNWNGSGATLGSGHFGGLRNYCNGATSGTTFAQSCKVNSAYSWTHGYLNTINGTACSVGGRNNTASGSDSAVFGNGNTSTANYSFAIGNGNTVGHHYARSLGGYKGSTLYQGELLVWAYRDTSVGTNPFVSRRQVPLSVVTSTTASALLATLDGITNLTMPVSTAWKCTLEVFARSTALRCAAFELKFRASTDSSGTLILGAPTVVWSDVDANFGTAANAASVSVVANGNAINCVVQPRVDSPVGAKWGAVLHINEVN
Physico‐chemical
properties
protein length:568 AA
molecular weight: 58232,27120 Da
isoelectric point:6,35439
aromaticity:0,08275
hydropathy:-0,12641

Domains

Domains [InterPro]
DC_0261
STR
1–317
DC_0261 IPR011049
IPR011049
STR
335–450
IPR011049
DC_0296
RBD
433–568
DC_0296
XOD48578.1
1 568
Architecture
STR
STR
RBD
STR 1-317 | STR 321-450 | RBD 451-568
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD48578.1
1 568
Domain Start End Length (AA) Confidence
N-terminal 1 228 228 0,5421
Central domain 229 427 200 0,7700
C-terminal 428 568 140 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-228
Central
229-427
C-terminal
428-568

Taxonomy

  Name Taxonomy ID Lineage
Phage Ralstonia phage YL3
[NCBI] 		3390403 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Ralstonia pseudosolanacearum
[NCBI] 		1310165 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD48578.1 [NCBI]
Genbank nucleotide accession
PQ295878 [NCBI]
CDS location
range 52918 -> 54624
strand +
CDS
GTGACCGAATCACTGAACAGCCGCGTCGCCAAGTTCGACGAGATCGTCACCAACGTTGACACGTGGGTGAAGGGCGGGAGCGCCGACACCGTTGATTTCGGTGGCGGCCCGGTCGATTCGCCCGCAAAGCTCATCGAGGGCCAGCGAACAGACATCGCTGCTGCTGCTGCGGCGCTGATCTCGCAGAAGGACGAGCAGATCAACCAGCAGGCGAACGGCGTGCTGGCGCAGGCGAACGCGGCGGCCAGCAATGCAAACGGCAGCGCTGGCGCGGCGTCGGCGAGCGCAGCGAGTGCGGCAGCGTCGGCGGCCAACAGCGCTGCGAGCGCGGCAGATGCCGCCGCATCGTCGGCTCAGAAGTTCGTGACGTCGGCTGGCGCGGCGAACCAGAAGCCGAACACGTCCTACACCTACATCAACCCGCTGTCGCGCGTGTGCACCATCACCGGCGGCGGAGACGGCTCGAACTTCCAGATGATCGGGTACGGCCACAACCGCCAGAAGTTTCTGGGCGCGGCCACCACTGGCGTCTGGAACTACCTGCCGGTCAACGGCATCGCCAACCTGAATTTCTACAGGATCGCGGGAGATGGCACTCGCACAAAGCTGACGTACACATCCGGCACTCCGACCGGTAATCAGTGGTCCGGCACCGTTGGCGCCAGCAGCGTCACCTGGACGCTCGGCACAGCCCTGGACACGTTGAGCAAACTGTTCGTTGAAGACCCATTTGCCACGATCCCGACGACGGGCACGCAGCCTGACTACTCCTGGATCGGCGGCGGCTATGACAATGTGGTCGATAGGGGCGTGATGCAGCATGTCACGGGCGCGCACAATCGCGTGCTCGACGGCGACCACACCACGATGCTGGGCGGCAGCTACCACACCAACGACGGGGGCAGCTACAACGCATTCTGCGGCGGTACCGACAACTGGAACGGATCGGGCGCCACGCTGGGCAGCGGTCACTTCGGCGGGCTGCGCAACTATTGCAACGGCGCCACCTCTGGCACGACGTTCGCGCAGTCCTGCAAGGTGAACTCTGCGTACAGCTGGACGCACGGTTACCTGAACACCATCAACGGCACGGCATGCTCGGTCGGCGGGCGAAACAACACCGCATCCGGGTCGGACTCGGCCGTCTTCGGCAACGGCAACACCAGCACCGCGAACTACTCGTTCGCCATCGGCAACGGCAACACGGTCGGCCATCACTACGCCCGCAGTCTGGGCGGGTACAAGGGCAGCACGCTGTATCAGGGTGAGCTGCTGGTCTGGGCGTACCGCGACACGTCGGTCGGCACGAACCCGTTCGTGAGCCGCCGGCAGGTCCCGCTGTCCGTCGTCACCAGCACCACCGCATCGGCACTGCTAGCCACGCTGGACGGCATCACCAACCTCACGATGCCCGTCAGCACCGCCTGGAAGTGCACGCTGGAGGTGTTCGCGCGCAGCACGGCCCTGCGGTGCGCCGCGTTCGAGCTGAAGTTTCGGGCCAGCACCGATTCATCAGGCACTCTGATCCTGGGCGCGCCGACCGTGGTCTGGTCCGACGTGGACGCGAATTTCGGCACGGCTGCCAACGCTGCCTCGGTCTCGGTCGTCGCCAACGGCAACGCCATCAACTGCGTGGTGCAGCCACGGGTCGATTCTCCAGTCGGCGCAAAATGGGGCGCCGTGCTGCACATCAATGAGGTGAACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
4464c30224cba4254696cfcc138eac362a450af8cdfe5e72b9dc106a0ba050d8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7592
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of a Virulent Phage Cocktail Formula and Evaluation for Control of Tobacco Bacterial Wilt Disease He,H. 2025-03-13 — GenBank