Protein

View in Explore
Genbank accession
QHJ72936.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MSRQIINKPLQLNKVEKGRLTDSCLLVRNKDSIIKEIDVKDLKDLNSSKQWFYHIPLTSYPSNLFFSNVSSGGSYPVNSANVGANYFQLMSDSPYGTGLNINAFESGVNLFEGESLSVDLVYDTSINYLPEFFNTTCWRVAIGQTGVETDFTGLDFCLNGIIQIASKRNTDITRIDTGILFAKDVIYNVQITRSAQGYSVKISDKKTSEVLFESELTTNVSELSGFTVFPYNKTGSSPSGLFKMGIVRLGYCP
Physico‐chemical
properties
protein length:253 AA
molecular weight: 28070,42280 Da
isoelectric point:5,53205
aromaticity:0,11067
hydropathy:-0,13755

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QHJ72936.1
1 253
Domain Start End Length (AA) Confidence
N-terminal 1 127 127 0,3532
Central domain 128 242 116 0,0477
C-terminal 243 253 10 0,9592
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-127
Central
128-242
C-terminal
243-253

Taxonomy

  Name Taxonomy ID Lineage
Phage Flavobacterium phage fF4
[NCBI] 		2692741 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Flavobacterium columnare NBRC 100251 = ATCC 23463
[NCBI] 		1218111 Bacteroidota > Flavobacteriia > Flavobacteriales > Flavobacteriaceae > Flavobacterium > Flavobacterium columnare

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QHJ72936.1 [NCBI]
Genbank nucleotide accession
MN850656 [NCBI]
CDS location
range 30027 -> 30788
strand +
CDS
ATGAGCAGACAAATTATTAACAAGCCACTTCAACTTAATAAAGTGGAAAAAGGAAGACTTACCGATAGTTGTCTATTGGTAAGAAATAAAGATAGTATTATAAAAGAAATTGACGTGAAAGATTTGAAAGATTTGAACTCTTCTAAACAATGGTTTTACCATATCCCGTTAACCTCATATCCTTCTAATCTTTTTTTTTCAAATGTAAGCTCTGGTGGTTCTTACCCTGTTAATTCAGCCAATGTTGGAGCTAATTACTTTCAGTTAATGAGCGACTCTCCCTATGGTACTGGTTTAAATATCAATGCTTTTGAATCAGGTGTTAATTTGTTTGAGGGAGAAAGTTTATCCGTTGACCTTGTTTATGATACTTCAATTAATTATTTGCCTGAATTTTTCAATACCACATGCTGGCGTGTTGCTATTGGACAAACAGGCGTAGAAACAGACTTTACAGGGCTTGATTTTTGTTTAAATGGAATAATTCAAATAGCTAGCAAACGAAATACTGATATTACAAGAATCGACACAGGTATTTTATTTGCTAAGGATGTCATATACAACGTACAAATAACACGAAGCGCACAGGGGTATAGCGTAAAAATTTCAGATAAAAAAACAAGCGAAGTTCTTTTTGAAAGCGAGCTAACTACAAACGTTTCAGAACTAAGTGGTTTTACCGTTTTTCCGTACAATAAAACGGGTTCAAGCCCTTCAGGGCTATTTAAAATGGGTATTGTTCGATTAGGATATTGTCCCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
95af3035f8236bec2f84eaa9b5fe75e5e0debc1c8f345cbead08c7b2df16cd98
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6565
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of a prevalent prophage in the species of the phylum Bacteroidetes Laanto,E., Ravantti,J.J. and Sundberg,L.-R. 2020-12-02 — GenBank