Protein

View in Explore

Genbank accession

YP_011898479.1 [GenBank]

Protein name

tail fiber protein

RBP type

Evidence UniProt/TrEMBL

Probability 1,00

Evidence GenBank

Probability 1,00

Evidence RBPdetect2

Probability 0,95

Protein sequence

MNSIRIAILSANNTPVAFMDNAHKKSMHYWDDELHEYLQGAANTYTFTVNAKHPDAEHVTVGNKVAFTRKGKSYYLNIVNTDQTEKTITATAWSLSFELINEDAGEYKAGKAMSFEEYLAVFDAERTLKLGLNEVSDKRITNEWTGTTSVLKRLFSLANVFSAEIEFETVLNRDYSLKEIVLNVYRKHSDTDSGVGEYRNDIVLRYGKGITGIRKTTDAEKLYTCIQPTGKDGLTINGLGKKEYDENGNIEYFTDGAIIRAPQARDRFPSNIVNKADAYILMRKEYDTDSKDKLYSMALTDLKTASEPVVTYEVDGYFDTNIGDTVRMQDQEWTPVLYLQARVSEQVRSLTNPKTAKTVFTNYKELTSEISDSLLQRMQDIINKNKVYTCSISTNNGIIFKNGIGSTTLTAYAYNNGTDVSSNLQFRWSKDGREFYVGRSVTVNASDVDVKAVYSFEALENGIKRGYYEVTIADLMDGEDGKDGEQGPQGEKGEQGEQGPPGPQGAPGLDGIQGPKGDQGIPGKDGKDGKTQYTHIAYANSADGRTDFSVSDSNREYIGMYVDFAQNDSADPTKYAWSKIKGTDGAIGTPGKPGADGKTPYLHIAYANSADGKTGFSTTDGTNKLYIGQYTDYTQADSTDATKYTWTKIKGEQGERGLQGLQGEKGEQGIPGTAGANGKTSYFHIKYSSVAKPTTFSQMTETPSAYIGTYVDFVQEDSTDPARYTWSQFKGSQGVKGDQGIAGKNGADGKTSYLHIAYANSADGKTGFDVSNSAGKFYIGQYTDFTQADSTDPTKYAWTKIKGENGKDGTNSRSYILEASDTAIKKGADGALTPSKITFRSFYRDGDSATRIPYNGRFKIEESTNGTSYSVKYTSSANESAKEYTPTATAKILRCTLYSADVTINALDTQSVVVLTDVDNLEIGGRNLLLNTGFNTFNHWIKGSNTKSLQMVNGWCEVTIGGTWSGFVQEFIPEKNVEYIVSYEAYLVDTVAETALLETDFGTPDQNQTINKTPAKYSLKLKYPSTSLNGKIDFMLSNNEVGKKWRIRNIKLEKGNKATDWSPAPEDIETLVVTLSNDSQTVATDTNGNGGNFIDCSTKVQVYNGAQDVSKVATYTVTKSSGIAGTWDLSTRTYKVSALSTDNGWVDIKVTYNGNSITRRFTVSKSKQGAQGATGPQGDNGPQGPAGTSGRGIKTITEYYLISSAKTGITTASSGWSTSVPTMTATNKYLWNYEKFTFTDNTTATTTPKIIGIYGDKGATGATGPQGPQGNAGATGPQGPQGVTGNGIKSITNYYLATASGSGVSASTSGWTTTVQAITASKKYLWNYEVVTYTNGSTYQSAPCIIGVYGDNGATGATGPSGIIVSSAAPVNPEVGQLWQTASGQPIKRWDGSKWVIHYISVDNLNAQTLSAIAADLGTVTAGLIKDKNGTMLIDVTSGKIISKKIVQGAVENVASLSNAYLAFSGKAPTTDRATMSVNLQNIMFTNENTGKATTIQFEDEMIYARNSVSPRISIYAYRNYDSGTVKGPYTSANSNNNIRVELKRRGFMVTCKITMLAQFPNSGSFGAFDEVRIPIGYRPVLDIRTPYNEVSGSSIFGTGRYLIGKDGGITIYVNNPNWTERHLSTTWITED

Physico‐chemical properties

protein length:	1632 AA
molecular weight:	177392,48430 Da
isoelectric point:	5,90127
aromaticity:	0,09865
hydropathy:	-0,51967

Domains

Domains [InterPro]

DC_0266
STR
1–615

DC_0266 G3DSA:1.20.5.320 DC_1441 G3DSA:1.20.5.320

IPR010572
ENZ
138–365

IPR010572 IPR050149 G3DSA:1.20.5.320 DC_1328

IPR008160
STR
477–530

IPR008160 DC_1328 DC_1545

G3DSA:1.20.5.320
STR
499–549

G3DSA:1.20.5.320

YP_011898479.1

1 1632

Architecture

STR

STR 1-1594 |

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_0266	STR	DC_0266	1	615	Novel HMM	DC_0266	Central	Low	Positional only	76 proteins / 76 hits
IPR010572	ENZ	DC_0675	138	365	InterPro cluster	Tail spike domain	Central	High	Text match	419 proteins / 419 hits
IPR050149	Unmapped	-	477	803	InterPro	Collagen superfamily	-	-	-	-
IPR008160	STR	DC_0536	477	530	InterPro cluster	Collagen triple helix repeat	C-terminal	High	Text match	355 proteins / 386 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	499	549	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1328	STR	DC_1328	580	735	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	651	704	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1441	STR	DC_1441	728	1212	Novel HMM	DC_1441	Central	Low	Positional only	9 proteins / 9 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	1165	1215	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1545	STR	DC_1545	1183	1284	Novel HMM	DC_1545	Central	Low	Positional only	18 proteins / 18 hits
G3DSA:1.20.5.320	STR	G3DSA:1.20.5.320	1255	1314	Merged direct domain	G3DSA:1.20.5.320	Central	Low	Positional only	67 proteins / 67 hits
DC_1328	STR	DC_1328	1271	1594	Novel HMM	DC_1328	Central	Low	Positional only	136 proteins / 136 hits

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Ruminococcus phage phiRgIBDN1 [NCBI]	2772520	Uroviricota > Caudoviricetes > Munstervirinae > Adovirus IBDN1 >
Host	No host information

Coding sequence (CDS)

Genbank protein accession

YP_011898479.1 [NCBI]

Genbank nucleotide accession

NC_104265.1 [NCBI]

CDS location

range 13479 -> 18377
strand +

CDS

ATGAACAGTATTAGAATTGCGATTCTGAGCGCAAATAACACACCAGTAGCATTTATGGATAATGCACATAAAAAATCCATGCACTACTGGGATGATGAGTTACACGAATACTTACAGGGAGCAGCGAATACCTATACTTTTACGGTAAACGCCAAACATCCAGACGCAGAACATGTTACAGTTGGAAACAAGGTGGCATTTACACGCAAGGGTAAATCTTACTACTTAAATATTGTAAATACCGACCAGACGGAGAAGACAATTACTGCCACAGCATGGTCGCTGTCGTTTGAGTTAATCAACGAGGATGCAGGGGAATACAAAGCTGGAAAAGCAATGAGCTTTGAAGAGTACCTTGCCGTGTTTGACGCAGAGAGAACGCTAAAATTAGGGCTTAATGAGGTGTCTGACAAACGGATCACCAATGAGTGGACAGGCACAACGTCTGTATTAAAGAGGCTATTTTCTCTGGCTAATGTCTTTTCTGCGGAGATCGAATTTGAGACAGTACTGAACAGAGACTACTCTTTAAAAGAGATTGTCCTAAATGTATATCGGAAACACTCCGATACAGACAGCGGAGTCGGAGAATACCGGAATGACATTGTACTGCGGTACGGGAAAGGAATTACCGGAATCCGTAAGACCACGGATGCAGAAAAGTTATATACATGCATCCAGCCGACCGGGAAAGACGGGCTGACAATCAATGGACTGGGCAAAAAAGAATACGATGAGAACGGGAATATCGAGTACTTTACAGACGGCGCAATCATCCGGGCACCACAGGCAAGAGACCGGTTCCCATCCAATATCGTAAATAAGGCTGATGCTTATATCCTGATGCGAAAAGAGTACGATACAGACAGCAAGGACAAGCTCTATAGCATGGCTCTGACTGATCTTAAAACAGCATCCGAACCAGTAGTGACCTACGAGGTGGATGGATATTTTGACACCAACATCGGGGACACCGTGAGGATGCAGGATCAGGAGTGGACACCAGTCCTTTATCTACAGGCGAGAGTGTCCGAACAGGTGCGCAGTCTTACAAATCCAAAGACAGCAAAGACGGTATTTACAAACTACAAAGAGCTGACATCGGAAATATCAGACAGCTTATTACAGAGGATGCAAGACATTATTAATAAAAATAAGGTTTATACTTGCTCTATCTCAACAAACAACGGCATTATCTTTAAAAATGGCATCGGTAGCACTACTCTTACTGCTTACGCCTACAACAACGGCACAGACGTGTCAAGCAACCTGCAGTTCCGGTGGAGTAAGGATGGACGGGAGTTTTATGTCGGACGGAGTGTGACGGTAAATGCATCTGATGTGGATGTAAAAGCAGTGTACTCATTTGAGGCTTTGGAAAATGGGATAAAACGTGGGTATTACGAGGTTACGATTGCAGATTTAATGGATGGAGAGGACGGAAAAGACGGGGAACAGGGTCCGCAAGGTGAGAAAGGAGAGCAAGGCGAACAGGGACCTCCGGGACCACAAGGCGCTCCGGGATTGGATGGTATACAGGGTCCAAAGGGGGATCAGGGAATCCCGGGAAAAGATGGGAAGGACGGAAAAACACAGTACACCCACATCGCCTATGCGAACAGCGCAGACGGTAGGACAGATTTTTCCGTGTCCGACAGTAATAGGGAGTATATCGGAATGTATGTTGATTTTGCGCAAAATGACAGCGCAGACCCGACAAAATACGCATGGAGTAAGATCAAAGGCACAGACGGGGCGATCGGAACACCCGGAAAGCCGGGAGCTGATGGAAAGACCCCGTATCTACATATCGCCTACGCAAACAGTGCAGATGGCAAGACGGGATTTTCCACCACGGATGGTACAAATAAGCTCTATATCGGGCAGTACACGGATTATACACAGGCAGATAGTACAGATGCTACGAAGTATACATGGACAAAAATAAAAGGAGAACAGGGGGAACGTGGGCTACAAGGGCTGCAAGGAGAAAAAGGCGAACAGGGGATTCCTGGAACAGCTGGTGCGAATGGAAAGACCAGTTATTTCCACATCAAGTATTCTTCTGTGGCAAAGCCGACAACGTTCAGTCAGATGACAGAGACGCCGTCTGCTTATATTGGAACTTATGTGGACTTTGTACAGGAAGATTCTACAGATCCTGCAAGATATACCTGGTCGCAGTTTAAAGGATCGCAAGGCGTAAAAGGAGATCAGGGAATTGCTGGTAAGAATGGTGCAGATGGGAAAACAAGTTATTTACATATCGCCTACGCAAACAGCGCAGATGGAAAGACAGGGTTTGATGTTTCGAATAGCGCTGGGAAGTTTTATATTGGACAGTATACAGATTTCACGCAAGCGGATTCTACAGACCCGACGAAATACGCATGGACAAAAATCAAAGGCGAAAATGGAAAAGACGGAACAAACTCAAGAAGCTACATCCTGGAAGCGTCCGATACCGCTATTAAAAAAGGTGCAGACGGAGCTTTAACACCATCTAAAATAACATTCCGGTCGTTTTATCGAGATGGAGACAGTGCGACAAGGATACCATATAATGGTAGATTTAAAATCGAAGAGTCAACCAACGGAACATCATACTCCGTGAAATACACCTCATCTGCGAACGAAAGTGCAAAGGAGTATACACCGACTGCAACTGCGAAAATACTCCGTTGCACGCTTTACAGCGCAGACGTGACTATAAATGCTTTGGATACGCAGAGTGTTGTTGTGCTTACGGATGTGGATAATTTGGAGATTGGCGGTAGGAATTTACTATTAAACACAGGGTTTAATACTTTTAACCATTGGATTAAAGGTAGTAATACAAAATCTCTCCAGATGGTTAATGGATGGTGTGAAGTTACGATTGGTGGGACATGGTCTGGATTTGTTCAAGAATTTATACCAGAAAAAAATGTTGAATACATAGTGAGTTACGAAGCGTATCTGGTAGACACTGTTGCTGAAACTGCTTTGTTAGAAACAGATTTTGGTACTCCAGATCAAAATCAAACAATTAACAAAACGCCTGCAAAATATTCATTGAAATTAAAATATCCATCTACATCTTTAAATGGAAAAATAGATTTCATGTTATCAAATAATGAAGTGGGTAAAAAATGGAGAATTCGAAATATCAAACTTGAAAAGGGTAATAAAGCCACAGACTGGTCTCCCGCTCCTGAGGACATAGAAACTTTAGTAGTAACATTGTCCAACGATTCCCAAACAGTAGCAACAGACACAAACGGAAACGGTGGAAACTTTATAGATTGCTCTACAAAAGTGCAGGTTTACAACGGCGCACAGGACGTTTCAAAAGTCGCTACTTACACCGTAACAAAATCTTCCGGAATTGCTGGTACATGGGATTTAAGTACACGTACTTACAAGGTATCCGCTCTATCTACGGATAACGGATGGGTTGACATTAAAGTAACATACAACGGAAATTCTATCACAAGACGGTTTACGGTTTCGAAATCGAAACAGGGCGCGCAGGGAGCAACGGGACCTCAAGGTGATAATGGACCACAAGGGCCGGCGGGGACATCAGGAAGAGGGATAAAAACTATTACAGAATATTATTTGATTTCTTCCGCAAAAACAGGAATTACAACAGCGTCAAGCGGTTGGAGTACATCAGTTCCGACGATGACAGCAACAAATAAATACTTGTGGAACTATGAAAAATTTACGTTTACAGATAATACGACAGCGACCACTACACCAAAAATAATCGGGATATACGGAGACAAAGGAGCAACAGGAGCTACCGGTCCACAAGGACCTCAAGGGAATGCAGGTGCAACAGGTCCCCAGGGGCCACAAGGGGTAACTGGAAACGGAATAAAATCTATCACGAATTATTATCTTGCAACGGCAAGCGGAAGCGGTGTGTCGGCGTCCACATCAGGATGGACTACAACTGTACAAGCAATAACGGCGTCAAAAAAATATCTGTGGAATTATGAAGTTGTTACCTATACAAATGGTAGCACGTATCAATCAGCACCATGTATCATCGGAGTATACGGTGATAATGGAGCGACCGGTGCTACAGGGCCAAGTGGCATAATTGTATCTTCTGCGGCTCCGGTGAATCCTGAAGTTGGCCAGTTATGGCAAACAGCCTCCGGTCAGCCGATCAAGCGGTGGGATGGAAGTAAATGGGTGATCCATTATATTTCTGTTGATAACTTAAACGCACAGACTTTAAGTGCGATAGCGGCAGATCTTGGAACTGTAACAGCCGGACTTATTAAGGATAAGAATGGAACAATGCTTATCGATGTTACATCCGGAAAGATTATTAGCAAGAAAATCGTGCAAGGAGCAGTGGAAAATGTTGCGTCATTGAGTAATGCGTATTTGGCTTTCTCCGGTAAGGCTCCGACAACAGATCGAGCTACTATGAGCGTGAACTTGCAAAACATCATGTTTACAAATGAAAATACGGGAAAAGCAACGACAATCCAGTTTGAGGATGAAATGATATATGCAAGAAATTCTGTATCCCCACGTATAAGCATATATGCGTATCGCAATTACGATTCCGGTACCGTGAAAGGTCCATATACAAGTGCAAACTCCAATAATAACATCCGCGTGGAACTAAAAAGAAGAGGATTTATGGTAACATGCAAGATCACAATGCTTGCGCAGTTTCCGAACAGCGGAAGTTTCGGAGCGTTTGATGAGGTGCGAATCCCTATTGGGTATCGCCCGGTGCTCGACATCAGAACACCTTACAACGAGGTGTCCGGCTCCTCGATCTTTGGAACCGGTCGATATCTAATTGGCAAAGACGGTGGAATTACAATCTATGTCAATAATCCAAATTGGACAGAGCGACATTTGTCTACCACATGGATTACGGAAGACTAA

Genome Context

Tertiary structure

PDB ID

55c0ee6028a0b5fddc25cb3cd9cb57e9c9fa90c2f37043c59998c96ce811c5dc

ColabFold

Source ColabFold

Method ColabFold

Resolution 0,8091

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Literature

Title	Authors	Date	PMID	Source
Temperate bacteriophages infecting mucin-degrading bacterium Ruminococcus gnavus from the human gut	Khokhlova,E.V., Shkoporov,A.N., Draper,L.A., Kingston,A.R., Forde,A., Ross,R.P. and Hill,C.	2023-03-30	—	GenBank

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence

Literature